Browse Element(s) Details


Os.22909.1.S1_at

Description gb:AK100769.1
DB_XREF= gi:32985978
TID=Os.22909.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22909 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023119N22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023119N22, full insert sequence.
FL= gb:AK100769.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1997010/11O-acetyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19940OsAffx.12949.1.S1_at9/113+11196562..11197196hypothetical protein
LOC_Os03g19950NANA3+11203351..11203830hypothetical protein
LOC_Os03g19960Os.18705.1.S1_a_at11/113+11216619..11220353Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed
LOC_Os03g19970Os.22909.1.S1_at10/113+11221095..11226313O-acetyltransferase, putative, expressed
LOC_Os03g19980Os.24159.1.S1_at11/113+11231175..11234138pentatricopeptide, putative, expressed
LOC_Os03g19980Os.14563.1.S1_at1/113+11231175..11234138pentatricopeptide, putative, expressed
LOC_Os03g19990Os.15298.1.S1_at11/113+11245654..11248931WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g19990Os.49781.1.S1_x_at1/113+11245654..11248931WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g20000OsAffx.25154.1.S1_at11/113+11249630..11249935hypothetical protein
LOC_Os03g20010Os.52775.1.S1_at11/113+11250689..11252043NifU-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016413molecular_functionO-acetyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22909.1.S1_at--372--271Chr03:11221629..11221731 (25 bp)
ATATGTTGCAGTCTCCCATAGGCTA
LOC_Os03g19970
Os.22909.1.S1_at--1018--1271Chr03:11221582..11221606 (25 bp)
AGATCGCATTTGTGCCTAGTCGTGA
LOC_Os03g19970
Os.22909.1.S1_at--977--2651Chr03:11221553..11221577 (25 bp)
AAGCGCCTCTCGTACAATTTTGTGG
LOC_Os03g19970
Os.22909.1.S1_at--336--10011Chr03:11221463..11221487 (25 bp)
TAGCAAGTCCTATAGTTGGCCTTAT
LOC_Os03g19970
Os.22909.1.S1_at--387--10871NONE
TTGGCCTTATGTGGCACCTGCAAAG
NONE
Os.22909.1.S1_at--108--8831Chr03:11221417..11221441 (25 bp)
TGATTACCTTCACGGCTTGGAGACT
LOC_Os03g19970
Os.22909.1.S1_at--965--5931Chr03:11221398..11221422 (25 bp)
GAGACTTCCATTGTTTCACCCTGAG
LOC_Os03g19970
Os.22909.1.S1_at--1073--3351Chr03:11221382..11221406 (25 bp)
CACCCTGAGCTTCGTTTTTTATGAG
LOC_Os03g19970
Os.22909.1.S1_at--814--6511Chr03:11221260..11221284 (25 bp)
GATATATGCCTGTATAGCCGTTGAA
LOC_Os03g19970
Os.22909.1.S1_at--729--4451Chr03:11221181..11221205 (25 bp)
GCCTCTTGGCCCGTTGAGATTGAGA
LOC_Os03g19970
Os.22909.1.S1_at--708--10411Chr03:11221123..11221147 (25 bp)
TTATTCTTTTGACCCTTCTCGAAAT
LOC_Os03g19970
Target Sequence 
ATATGTTGCAGTCTCCCATAGGCTATTTGAGTTGACTAACACCTTGAAGATCGCATTTGTGCCTAGTCGTGACAACAAGC
GCCTCTCGTACAATTTTGTGGCGGGAATTGCAATTTCAGTGGCGCTATATTCTTTATCATTTCTTATAGTNGGCGTTGCA
GGATACTAGCAAGTCCTATAGTTGGCCTTATGTGGCACCTGCAAAGCTGATTTGATTACCTTCACGGCTTGGAGACTTCC
ATTGTTTCACCCTGAGCTTCGTTTTTTATGAGTGTTACATGGTGAAAAGGAGTCGGGATGCAGAACAAAAAATGATCAGG
GAGAGTGTAACATGTAGCATTAAACCCCAAATGGGAATATAATGAAGTAGATATATGCCTGTATAGCCGTTGAAAATTGA
AATGCATATGTAAGCGAGCTCGTTGGCTATAGAAACTTCTNTCTCTTGGCCTCTTGGCCCGTTGAGATTGAGATTTGAAA
TAGGATAGTGGAAACATGTAAGAATATTATTCTTTTGACCCTTCTCGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis