Browse Element(s) Details


Os.24159.1.S1_at

Description gb:AK063446.1
DB_XREF= gi:32973464
TID=Os.24159.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24159 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-115-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-F06, full insert sequence.
FL= gb:AK063446.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1998011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19960Os.18705.1.S1_a_at11/113+11216619..11220353Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed
LOC_Os03g19970Os.22909.1.S1_at10/113+11221095..11226313O-acetyltransferase, putative, expressed
LOC_Os03g19980Os.24159.1.S1_at11/113+11231175..11234138pentatricopeptide, putative, expressed
LOC_Os03g19980Os.14563.1.S1_at1/113+11231175..11234138pentatricopeptide, putative, expressed
LOC_Os03g19990Os.15298.1.S1_at11/113+11245654..11248931WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g19990Os.49781.1.S1_x_at1/113+11245654..11248931WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g20000OsAffx.25154.1.S1_at11/113+11249630..11249935hypothetical protein
LOC_Os03g20010Os.52775.1.S1_at11/113+11250689..11252043NifU-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24159.1.S1_at--1004--8491Chr03:11233126..11233150 (25 bp)
TGGCATGTCCCAAAAATTCCTGGTT
LOC_Os03g19980
Os.24159.1.S1_at--92--6151Chr03:11233689..11233713 (25 bp)
GAGGGTGGTCTACTTCACCAAATTA
LOC_Os03g19980
Os.24159.1.S1_at--479--8011Chr03:11233788..11233812 (25 bp)
GGATGGCCTGTTATTTATAGTTAGC
LOC_Os03g19980
Os.24159.1.S1_at--908--6551Chr03:11233821..11233845 (25 bp)
GATTAACGCAGGCAGACTACCCAAG
LOC_Os03g19980
Os.24159.1.S1_at--632--3291Chr03:11233833..11233857 (25 bp)
CAGACTACCCAAGCTCCTAAATGGT
LOC_Os03g19980
Os.24159.1.S1_at--371--10431Chr03:11233930..11233954 (25 bp)
TTATGCCCTCGAATAATTGTCATGA
LOC_Os03g19980
Os.24159.1.S1_at--47--7131Chr03:11233948..11233972 (25 bp)
GTCATGAACTCTGTGTCATCCATCA
LOC_Os03g19980
Os.24159.1.S1_at--926--571Chr03:11233965..11233989 (25 bp)
ATCCATCACCCATCATCTATTTAGG
LOC_Os03g19980
Os.24159.1.S1_at--250--351Chr03:11234010..11234034 (25 bp)
ATAAGCTTGCAACCTTTATTGGTAT
LOC_Os03g19980
Os.24159.1.S1_at--576--31Chr03:11234027..11234051 (25 bp)
ATTGGTATGTTTAGCTTTGTCGTTG
LOC_Os03g19980
Os.24159.1.S1_at--4--751Chr03:11234074..11234098 (25 bp)
ATGTTATCACACTTATTGCACTGGA
LOC_Os03g19980
Target Sequence 
TGGCATGTCCCAAAAATTCCTGGTTCTAGTGTGGTTGAATCATCACTACCTTTGTGAGAATATATCATATGATGGTACTT
GAAATCAGAATACAGTGCTTAGAGTGGTTTGACTCAAGTTTCATAAGGCATGGAGCACATGAGAGTGAGGGTGGTCTACT
TCACCAAATTAAGGAGAGTAACTGTCTGTTTATATGAATATATCAGGGAGCTTGGTGAAGGGAGGAGGGAAGAATAAGGA
AGCAAGGATGGCCTGTTATTTATAGTTAGCAGATGACAGATTAACGCAGGCAGACTACCCAAGCTCCTAAATGGTACGAT
TTTTGCAAAAAACTTTCTTCATCAACATTTCTTAGATAACTTGTTTAAATCAACTTCCAATATTTAATTATGCCCTCGAA
TAATTGTCATGAACTCTGTGTCATCCATCACCCATCATCTATTTAGGGTGGGATCTTAAGGGGTGCAATAAGCTTGCAAC
CTTTATTGGTATGTTTAGCTTTGTCGTTGGAAGTTTTGAAGTTGGGACAACATGTTATCACACTTATTGCACTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24159.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis