Browse Element(s) Details


OsAffx.25154.1.S1_at

Description tigr:9631.m01982
TID=OsAffx.25154.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2000011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19970Os.22909.1.S1_at10/113+11221095..11226313O-acetyltransferase, putative, expressed
LOC_Os03g19980Os.24159.1.S1_at11/113+11231175..11234138pentatricopeptide, putative, expressed
LOC_Os03g19980Os.14563.1.S1_at1/113+11231175..11234138pentatricopeptide, putative, expressed
LOC_Os03g19990Os.15298.1.S1_at11/113+11245654..11248931WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g19990Os.49781.1.S1_x_at1/113+11245654..11248931WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g20000OsAffx.25154.1.S1_at11/113+11249630..11249935hypothetical protein
LOC_Os03g20010Os.52775.1.S1_at11/113+11250689..11252043NifU-like domain containing protein, expressed
LOC_Os03g20020Os.32659.1.S1_at11/113+11262173..11266726beta-fructofuranosidase, putative, expressed
LOC_Os03g20040NANA3+11273756..11275890hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25154.1.S1_at--271--9611Chr03:11249675..11249699 (25 bp)
TCATCATGCTCGCTATGTCAGGCCA
LOC_Os03g20000
OsAffx.25154.1.S1_at--26--771Chr03:11249689..11249713 (25 bp)
ATGTCAGGCCATTGTCTTGCTTCCA
LOC_Os03g20000
OsAffx.25154.1.S1_at--617--10811Chr03:11249700..11249724 (25 bp)
TTGTCTTGCTTCCACATCTGTCGAT
LOC_Os03g20000
OsAffx.25154.1.S1_at--545--9611Chr03:11249730..11249754 (25 bp)
TCATCCTCACCACTAGAGCCAAGGA
LOC_Os03g20000
OsAffx.25154.1.S1_at--1055--5851Chr03:11249745..11249769 (25 bp)
GAGCCAAGGAGCACTCTAGGAGCTT
LOC_Os03g20000
OsAffx.25154.1.S1_at--95--1491Chr03:11249754..11249778 (25 bp)
AGCACTCTAGGAGCTTCCGAGTCAA
LOC_Os03g20000
OsAffx.25154.1.S1_at--698--1551Chr03:11249765..11249789 (25 bp)
AGCTTCCGAGTCAAGATGGGCAATG
LOC_Os03g20000
OsAffx.25154.1.S1_at--892--791Chr03:11249780..11249804 (25 bp)
ATGGGCAATGTCAGCGACCGCAGCT
LOC_Os03g20000
OsAffx.25154.1.S1_at--526--3551Chr03:11249836..11249860 (25 bp)
CATCTACTCACTCGATTCGTTCGAA
LOC_Os03g20000
OsAffx.25154.1.S1_at--1054--6571Chr03:11249849..11249873 (25 bp)
GATTCGTTCGAATACCACATTGATG
LOC_Os03g20000
OsAffx.25154.1.S1_at--1073--691Chr03:11249871..11249895 (25 bp)
ATGAGGAGGTTGAGGCTATCGTCTC
LOC_Os03g20000
Target Sequence 
TCATCATGCTCGCTATGTCAGGCCATTGTCTTGCTTCCACATCTGTCGATCTCCGTCATCCTCACCACTAGAGCCAAGGA
GCACTCTAGGAGCTTCCGAGTCAAGATGGGCAATGTCAGCGACCGCAGCTCGTCCACAGCCAGCTGCGGCAACAACCTCC
CCATCTACTCACTCGATTCGTTCGAATACCACATTGATGAGGAGGTTGAGGCTATCGTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25154.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis