Browse Element(s) Details


Os.32659.1.S1_at

Description gb:AK103334.1
DB_XREF= gi:32988543
TID=Os.32659.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.32659 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033125P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033125P15, full insert sequence.
FL= gb:AK103334.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2002011/11beta-fructofuranosidase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19990Os.15298.1.S1_at11/113+11245654..11248931WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g19990Os.49781.1.S1_x_at1/113+11245654..11248931WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g20000OsAffx.25154.1.S1_at11/113+11249630..11249935hypothetical protein
LOC_Os03g20010Os.52775.1.S1_at11/113+11250689..11252043NifU-like domain containing protein, expressed
LOC_Os03g20020Os.32659.1.S1_at11/113+11262173..11266726beta-fructofuranosidase, putative, expressed
LOC_Os03g20040NANA3+11273756..11275890hypothetical protein
LOC_Os03g20050Os.45212.1.S1_x_at1/113+11276194..11279587retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g20060OsAffx.25156.1.S1_x_at2/113+11281031..11283633hypothetical protein
LOC_Os03g20060OsAffx.25156.5.S1_x_at2/113+11281031..11283633hypothetical protein
LOC_Os03g20070OsAffx.25157.1.S1_at11/113+11286443..11287140hypothetical protein
LOC_Os03g20080Os.27140.2.S1_at11/113+11290357..11294684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g20080Os.27140.1.S1_a_at10/113+11290357..11294684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g20080Os.27140.2.S2_at4/113+11290357..11294684retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g20080OsAffx.10048.1.S1_x_at1/113+11290357..11294684retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0004564molecular_functionbeta-fructofuranosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32659.1.S1_at--567--5771Chr03:11262605..11262629 (25 bp)
GACGATTGCAGGATACCTTAGCTCT
LOC_Os03g20020
Os.32659.1.S1_at--1136--5711Chr03:11262568..11262592 (25 bp)
GACTGTCCAGAATTGGCATCCATAT
LOC_Os03g20020
Os.32659.1.S1_at--237--7451Chr03:11262498..11262522 (25 bp)
GTGTGAACAAGAGTGCCCGAACCAA
LOC_Os03g20020
Os.32659.1.S1_at--721--2271Chr03:11262475..11262499 (25 bp)
AAATGCTCCCGTCGTGCGGCAAGGT
LOC_Os03g20020
Os.32659.1.S1_at--525--2891Chr03:11262455..11262479 (25 bp)
AAGGTCGCAGGTTCTTGTGTAGTAC
LOC_Os03g20020
Os.32659.1.S1_at--259--5711Chr03:11262416..11262440 (25 bp)
GACTACCAAGATGGGCACTGCACAT
LOC_Os03g20020
Os.32659.1.S1_at--766--3331Chr03:11262401..11262425 (25 bp)
CACTGCACATTCTACTTCGTTGTAT
LOC_Os03g20020
Os.32659.1.S1_at--3--1531Chr03:11262357..11262381 (25 bp)
AGCATAGTTACTTCACCAGGGTGGC
LOC_Os03g20020
Os.32659.1.S1_at--867--7531Chr03:11262337..11262361 (25 bp)
GTGGCCACCTATGCCGGTTATTTTG
LOC_Os03g20020
Os.32659.1.S1_at--892--8211Chr03:11262313..11262337 (25 bp)
GGCAATCTTGTGGTTAATCCATCGA
LOC_Os03g20020
Os.32659.1.S1_at--924--2591Chr03:11262287..11262311 (25 bp)
AACGCTTGTGTGTACATTCTACCAA
LOC_Os03g20020
Target Sequence 
GACGATTGCAGGATACCTTAGCTCTAAAATGCTNTTAGACTGTCCAGAATTGGCATCCATATTGATTTGTGAGGAAGATC
TCGAGCTGCTGGAAGGGTGTGCATGCAGTGTGAACAAGAGTGCCCGAACCAAATGCTCCCGTCGTGCGGCAAGGTCGCAG
GTTCTTGTGTAGTACCACAATTGGTGCTTGACTACCAAGATGGGCACTGCACATTCTACTTCGTTGTATTTTTTACGTTG
CTCTAGTTAGCATAGTTACTTCACCAGGGTGGCCACCTATGCCGGTTATTTTGGCAATCTTGTGGTTAATCCATCGATAA
CGCTTGTGTGTACATTCTACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32659.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis