Browse Element(s) Details


Os.52775.1.S1_at

Description gb:AK069184.1
DB_XREF= gi:32979208
TID=Os.52775.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52775 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023009A17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023009A17, full insert sequence.
FL= gb:AK069184.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2001011/11NifU-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19970Os.22909.1.S1_at10/113+11221095..11226313O-acetyltransferase, putative, expressed
LOC_Os03g19980Os.24159.1.S1_at11/113+11231175..11234138pentatricopeptide, putative, expressed
LOC_Os03g19980Os.14563.1.S1_at1/113+11231175..11234138pentatricopeptide, putative, expressed
LOC_Os03g19990Os.15298.1.S1_at11/113+11245654..11248931WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g19990Os.49781.1.S1_x_at1/113+11245654..11248931WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g20000OsAffx.25154.1.S1_at11/113+11249630..11249935hypothetical protein
LOC_Os03g20010Os.52775.1.S1_at11/113+11250689..11252043NifU-like domain containing protein, expressed
LOC_Os03g20020Os.32659.1.S1_at11/113+11262173..11266726beta-fructofuranosidase, putative, expressed
LOC_Os03g20040NANA3+11273756..11275890hypothetical protein
LOC_Os03g20050Os.45212.1.S1_x_at1/113+11276194..11279587retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009658biological_processchloroplast organization and biogenesis
GO:0016226biological_processiron-sulfur cluster assembly
GO:0009507cellular_componentchloroplast
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52775.1.S1_at--1050--7331Chr03:11251532..11251556 (25 bp)
GTGAGGTACGAAGGCCCCGAGTCCA
LOC_Os03g20010
Os.52775.1.S1_at--181--1431Chr03:11251587..11251611 (25 bp)
AGAAGTTCCCGGACATCACCAATGT
LOC_Os03g20010
Os.52775.1.S1_at--1131--7411Chr03:11251613..11251637 (25 bp)
GTGTTCTTGCAGTGAGCTATCCAGA
LOC_Os03g20010
Os.52775.1.S1_at--1089--2411Chr03:11251637..11251661 (25 bp)
AAAATTTTTACCTCATTGGCATGCA
LOC_Os03g20010
Os.52775.1.S1_at--828--651Chr03:11251671..11251695 (25 bp)
ATGCACCAGTTTTCGATGGCTGTTC
LOC_Os03g20010
Os.52775.1.S1_at--360--9631Chr03:11251694..11251718 (25 bp)
TCATGTGCTAGTGAACTTGTTCCGA
LOC_Os03g20010
Os.52775.1.S1_at--869--6691Chr03:11251712..11251736 (25 bp)
GTTCCGATGTATGTTCAGGTGCAAT
LOC_Os03g20010
Os.52775.1.S1_at--367--3471Chr03:11251727..11251751 (25 bp)
CAGGTGCAATCTTTACAGTGTTCGC
LOC_Os03g20010
Os.52775.1.S1_at--750--8151Chr03:11251771..11251795 (25 bp)
GGAAACGGAATGATACTTGCCTATT
LOC_Os03g20010
Os.52775.1.S1_at--250--10691Chr03:11251787..11251811 (25 bp)
TTGCCTATTGTCACCTCACTTGAAA
LOC_Os03g20010
Os.52775.1.S1_at--691--4631Chr03:11251929..11251953 (25 bp)
GCGATTACTACTACCTAGCAAGTCT
LOC_Os03g20010
Target Sequence 
GTGAGGTACGAAGGCCCCGAGTCCATCGGGAGCGGGATCAAGGCGGCCATCAAGGAGAAGTTCCCGGACATCACCAATGT
GGTGTTCTTGCAGTGAGCTATCCAGAAAATTTTTACCTCATTGGCATGCATGAGTTAAAATGCACCAGTTTTCGATGGCT
GTTCATGTGCTAGTGAACTTGTTCCGATGTATGTTCAGGTGCAATCTTTACAGTGTTCGCAGATACAATACACAAACAGG
GAAACGGAATGATACTTGCCTATTGTCACCTCACTTGAAATAGTATTTGGATTTAGGGGAATAATCCATATGGATCGTCA
AGTTAGATGTTCAAATTATAAGTTTTCGAAGGTAGCAAGTAGCCAAGTAGGAAAAGCCCCTAATTGGCCAAGTATTAGCG
ATTACTACTACCTAGCAAGTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52775.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis