Browse Element(s) Details


Os.35451.1.S1_at

Description gb:AK067474.1
DB_XREF= gi:32977492
TID=Os.35451.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35451 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013107G14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013107G14, full insert sequence.
FL= gb:AK067474.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1993011/11Adenylosuccinate lyase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19900Os.56314.1.S1_at4/113+11163340..11168139AP2 domain containing protein
LOC_Os03g19910OsAffx.25153.1.S1_at11/113+11176061..11176843hypothetical protein
LOC_Os03g19920OsAffx.12948.1.S1_at11/113+11178765..11183846Poly polymerase central domain containing protein, expressed
LOC_Os03g19930Os.35451.1.S1_at11/113+11189599..11193778Adenylosuccinate lyase, putative, expressed
LOC_Os03g19940OsAffx.12949.1.S1_at9/113+11196562..11197196hypothetical protein
LOC_Os03g19950NANA3+11203351..11203830hypothetical protein
LOC_Os03g19960Os.18705.1.S1_a_at11/113+11216619..11220353Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004018molecular_functionadenylosuccinate lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35451.1.S1_at--198--8571Chr03:11192735..11192759 (25 bp)
TGGATCAAACATGGGAGGTCCTTGC
LOC_Os03g19930
Os.35451.1.S1_at--343--7651Chr03:11192747..11192771 (25 bp)
GGGAGGTCCTTGCAGAGCCAATACA
LOC_Os03g19930
Os.35451.1.S1_at--1079--10731Chr03:11192756..11192777 (22 bp)
TTGCAGAGCCAATACAGACAGTGAT
LOC_Os03g19930
Os.35451.1.S1_at--126--8851Chr03:11193229..11193253 (25 bp)
TGATGCGAAGGTATGGAATCCCTGA
LOC_Os03g19930
Os.35451.1.S1_at--581--3391Chr03:11193305..11193329 (25 bp)
CAGCATACGGCAATTCATTGAAGAT
LOC_Os03g19930
Os.35451.1.S1_at--242--9671Chr03:11193595..11193619 (25 bp)
TCAGCTGTGCTGATTGAAAGGCTTT
LOC_Os03g19930
Os.35451.1.S1_at--243--8971Chr03:11193609..11193633 (25 bp)
TGAAAGGCTTTTGGATGCACGCAAA
LOC_Os03g19930
Os.35451.1.S1_at--135--10371Chr03:11193707..11193731 (25 bp)
TTTTTCAATCGCAAGTGGCCTTGCT
LOC_Os03g19930
Os.35451.1.S1_at--1094--8451Chr03:11193722..11193746 (25 bp)
TGGCCTTGCTACAGTCTTCATTAAT
LOC_Os03g19930
Os.35451.1.S1_at--883--2131Chr03:11193732..11193756 (25 bp)
ACAGTCTTCATTAATGCAGCATTCG
LOC_Os03g19930
Os.35451.1.S1_at--1124--5051Chr03:11193747..11193771 (25 bp)
GCAGCATTCGCCTTTGCATCGAGCA
LOC_Os03g19930
Target Sequence 
TGGATCAAACATGGGAGGTCCTTGCAGAGCCAATACAGACAGTGATGCGAAGGTATGGAATCCCTGANCCTTATGAGAAG
NTGAAGGAAATGNCCAGAGGGCAGGNTGTCNCCAAGGNCAGCATACGGCAATTCATTGAAGATNTAGACTTGCCANAGGC
GGCACGATCGTCGNTTNTGAAGCTAACNCCNCATTNTTATATCGGAGAGGCAGAATTTTTGGCTAGAAATATCGAAGAGG
TGGTTGATNTAAAATNTGGATTTAAGATCGAGTGAGCNCCCGTTCCGGAACTCGGTAATCCCCCCAAATTTTTTACCAGG
ACAGGAAGAATAACGGGCGAAANTNTTCAAAGCTGAGGGTGAACNCCGAATTGTGTCCTGNCCTTNAACAANTTCCGGTT
ACGNTAATTCAGCTGTGCTGATTGAAAGGCTTTTGGATGCACGCAAAATGCATCCGTGGAATTTGTNCCATGNGTGTTTC
GGAATAAAATCAGAAGCAGGATAAATNTTGCTCGCCTGTNTTTTTCAATCGCAAGTGGCCTTGCTACAGTCTTCATTAAT
GCAGCATTCGCCTTTGCATCGAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35451.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis