Browse Element(s) Details


OsAffx.12948.1.S1_at

Description tigr:9631.m01974
TID=OsAffx.12948.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Poly(A) polymerase central domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1992011/11Poly polymerase central domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19870Os.14774.1.S1_s_at11/113+11150478..11156838XPA-binding protein 1, putative, expressed
LOC_Os03g19870Os.14774.2.S1_at10/113+11150478..11156838XPA-binding protein 1, putative, expressed
LOC_Os03g19880OsAffx.12947.1.S1_at11/113+11157118..11157489hypothetical protein
LOC_Os03g19890Os.12831.1.S1_at10/113+11159816..11162760ETC complex I subunit conserved region family protein, expressed
LOC_Os03g19900Os.56314.1.S1_at4/113+11163340..11168139AP2 domain containing protein
LOC_Os03g19910OsAffx.25153.1.S1_at11/113+11176061..11176843hypothetical protein
LOC_Os03g19920OsAffx.12948.1.S1_at11/113+11178765..11183846Poly polymerase central domain containing protein, expressed
LOC_Os03g19930Os.35451.1.S1_at11/113+11189599..11193778Adenylosuccinate lyase, putative, expressed
LOC_Os03g19940OsAffx.12949.1.S1_at9/113+11196562..11197196hypothetical protein
LOC_Os03g19950NANA3+11203351..11203830hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006350biological_processtranscription
GO:0004652molecular_functionpolynucleotide adenylyltransferase activity
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12948.1.S1_at--1106--5471Chr03:11180123..11180147 (25 bp)
GAACTTCAGCGTGGTTTTGCTTTGA
LOC_Os03g19920
OsAffx.12948.1.S1_at--99--31Chr03:11179308..11179332 (25 bp)
ATTGGACTGAGCTTTTTGCACCTTT
LOC_Os03g19920
OsAffx.12948.1.S1_at--674--9011Chr03:11179292..11179316 (25 bp)
TGCACCTTTTCCGTATACTGTGAGA
LOC_Os03g19920
OsAffx.12948.1.S1_at--564--171Chr03:11179260..11179284 (25 bp)
ATTTTCTCCGTATAGTTCTTTCTGC
LOC_Os03g19920
OsAffx.12948.1.S1_at--251--5551Chr03:11179196..11179220 (25 bp)
GAAATCACGATTTCGCAACCTTCTT
LOC_Os03g19920
OsAffx.12948.1.S1_at--788--8671Chr03:11179058..11179082 (25 bp)
TGTGATCCAGATCCCTCAGAACAAG
LOC_Os03g19920
OsAffx.12948.1.S1_at--390--10771Chr03:11179018..11179042 (25 bp)
TTGAGCCTAATGTCGTATTTTTCTG
LOC_Os03g19920
OsAffx.12948.1.S1_at--839--7031Chr03:11178973..11178997 (25 bp)
GTACAAACATCTGCATCGACTCTGT
LOC_Os03g19920
OsAffx.12948.1.S1_at--971--971Chr03:11178904..11178928 (25 bp)
AGGAGAAGTGCACCCATTCAGACAT
LOC_Os03g19920
OsAffx.12948.1.S1_at--703--9791Chr03:11178880..11178904 (25 bp)
TAACGATGTCCATTGTCTGGCCAAC
LOC_Os03g19920
OsAffx.12948.1.S1_at--340--211Chr03:11178853..11178877 (25 bp)
ATTTGCCCAAATGTGTGTATGCTCA
LOC_Os03g19920
Target Sequence 
GAACTTCAGCGTGGTTTTGCTTTGACCAAGCTTGGTGTTTGCACTGTTGAACAGGGTGATAGGAATGGTGATATTAATTG
GACTGAGCTTTTTGCACCTTTTCCGTATACTGTGAGATACAAACATTTTCTCCGTATAGTTCTTTCTGCTCCAGTGGCTG
AAGAATTACGTGATTGGGTTGGATGGGTGAAATCACGATTTCGCAACCTTCTTCTCAAGTTAGAAAGCATTGGTGTTGAT
TGTGATCCAGATCCCTCAGAACAAGCCGATCATAGCATGATTGAGCCTAATGTCGTATTTTTCTGGGGTCTCATGTATAG
AACGAGTACAAACATCTGCATCGACTCTGTGAAAGAAGACTTCATGAAGAGTGTCACCAACGACATCTATGGAAAGGAGA
AGTGCACCCATTCAGACATAACGATGTCCATTGTCTGGCCAACCCATTTGCCCAAATGTGTGTATGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis