Browse Element(s) Details


OsAffx.12947.1.S1_at

Description tigr:9631.m01970
TID=OsAffx.12947.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1988011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19810OsAffx.3278.1.S1_at11/113+11132765..11134146hypothetical protein
LOC_Os03g19820OsAffx.25151.1.S1_at11/113+11135454..11135837hypothetical protein
LOC_Os03g19830OsAffx.12945.1.S1_at11/113+11137208..11137672hypothetical protein
LOC_Os03g19840Os.28566.1.S1_at11/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19840Os.27455.2.S1_at2/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19840Os.47130.4.A1_x_at2/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19850OsAffx.25152.1.S1_at11/113+11147034..11147501expressed protein
LOC_Os03g19860Os.54749.1.S2_at11/113+11148696..11150211expressed protein
LOC_Os03g19860Os.54749.1.S1_at11/113+11148696..11150211expressed protein
LOC_Os03g19870Os.14774.1.S1_s_at11/113+11150478..11156838XPA-binding protein 1, putative, expressed
LOC_Os03g19870Os.14774.2.S1_at10/113+11150478..11156838XPA-binding protein 1, putative, expressed
LOC_Os03g19880OsAffx.12947.1.S1_at11/113+11157118..11157489hypothetical protein
LOC_Os03g19890Os.12831.1.S1_at10/113+11159816..11162760ETC complex I subunit conserved region family protein, expressed
LOC_Os03g19900Os.56314.1.S1_at4/113+11163340..11168139AP2 domain containing protein
LOC_Os03g19910OsAffx.25153.1.S1_at11/113+11176061..11176843hypothetical protein
LOC_Os03g19920OsAffx.12948.1.S1_at11/113+11178765..11183846Poly polymerase central domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12947.1.S1_at--260--4711Chr03:11157159..11157183 (25 bp)
GCGGCGCTGTGAGGGCGACAACGAC
LOC_Os03g19880
OsAffx.12947.1.S1_at--833--4011Chr03:11157309..11157333 (25 bp)
CGTCGGCGGAGAGAATGCTACGGGC
LOC_Os03g19880
OsAffx.12947.1.S1_at--497--1471Chr03:11157320..11157344 (25 bp)
AGAATGCTACGGGCGGCACTGGATT
LOC_Os03g19880
OsAffx.12947.1.S1_at--179--7572Chr03:11157389..11157413 (25 bp)
GGGCCCACGATTTAGCCAGCGCGAG
LOC_Os03g19880
OsAffx.12947.1.S1_at--788--1871Chr03:11157395..11157419 (25 bp)
ACGATTTAGCCAGCGCGAGCGACTT
LOC_Os03g19880
OsAffx.12947.1.S1_at--283--10351Chr03:11157399..11157423 (25 bp)
TTTAGCCAGCGCGAGCGACTTTGGC
LOC_Os03g19880
OsAffx.12947.1.S1_at--366--3391Chr03:11157405..11157429 (25 bp)
CAGCGCGAGCGACTTTGGCCAGCCA
LOC_Os03g19880
OsAffx.12947.1.S1_at--636--4351Chr03:11157423..11157447 (25 bp)
CCAGCCAGGCTGTTGGAGTGCAAAT
LOC_Os03g19880
OsAffx.12947.1.S1_at--141--1692Chr03:11157425..11157449 (25 bp)
AGCCAGGCTGTTGGAGTGCAAATTT
LOC_Os03g19880
OsAffx.12947.1.S1_at--108--4751Chr03:11157431..11157455 (25 bp)
GCTGTTGGAGTGCAAATTTGAGCCA
LOC_Os03g19880
OsAffx.12947.1.S1_at--818--6611Chr03:11157434..11157458 (25 bp)
GTTGGAGTGCAAATTTGAGCCAAAA
LOC_Os03g19880
Target Sequence 
GCGGCGCTGTGAGGGCGACAACGACGACGGAGCCGGGAGGACGACGACGTCGGCACTGGGCAGATGGTGGGGCAGGCAGG
GAGGGAGCTCTCTTCGCCGGCACAGGGAGGGAGCTCTCTTCGCCGGCGGAGGGGTGGCGCGGATGGGCGGCGTCGGCGGA
GAGAATGCTACGGGCGGCACTGGATTTGGGAGGAGGAGAGAGGCTACAGGAGGGAGAGAGAATAGAGGTGGGGCCCACGA
TTTAGCCAGCGCGAGCGACTTTGGCCAGCCAGGCTGTTGGAGTGCAAATTTGAGCCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis