Browse Element(s) Details


Os.28566.1.S1_at

Description gb:AK111364.1
DB_XREF= gi:32996573
TID=Os.28566.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28566 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-181-H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-H09, full insert sequence.
FL= gb:AK111364.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1984011/1133 kDa secretory protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19800NANA3+11125162..11126244hypothetical protein
LOC_Os03g19810OsAffx.3278.1.S1_at11/113+11132765..11134146hypothetical protein
LOC_Os03g19820OsAffx.25151.1.S1_at11/113+11135454..11135837hypothetical protein
LOC_Os03g19830OsAffx.12945.1.S1_at11/113+11137208..11137672hypothetical protein
LOC_Os03g19840Os.28566.1.S1_at11/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19840Os.27455.2.S1_at2/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19840Os.47130.4.A1_x_at2/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19850OsAffx.25152.1.S1_at11/113+11147034..11147501expressed protein
LOC_Os03g19860Os.54749.1.S2_at11/113+11148696..11150211expressed protein
LOC_Os03g19860Os.54749.1.S1_at11/113+11148696..11150211expressed protein
LOC_Os03g19870Os.14774.1.S1_s_at11/113+11150478..11156838XPA-binding protein 1, putative, expressed
LOC_Os03g19870Os.14774.2.S1_at10/113+11150478..11156838XPA-binding protein 1, putative, expressed
LOC_Os03g19880OsAffx.12947.1.S1_at11/113+11157118..11157489hypothetical protein
LOC_Os03g19890Os.12831.1.S1_at10/113+11159816..11162760ETC complex I subunit conserved region family protein, expressed
LOC_Os03g19900Os.56314.1.S1_at4/113+11163340..11168139AP2 domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28566.1.S1_at--294--9211Chr03:11143101..11143125 (25 bp)
TGCCACTATGCATCGGACTCCAGGA
LOC_Os03g19840
Os.28566.1.S1_at--192--2531Chr03:11140403..11140427 (25 bp)
AACTTCATTGGACAGGTGGACACGA
LOC_Os03g19840
Os.28566.1.S1_at--28--5531Chr03:11140346..11140370 (25 bp)
GAAAACATGGACAACCCTAAGACGT
LOC_Os03g19840
Os.28566.1.S1_at--482--1851Chr03:11140301..11140325 (25 bp)
ACGATGGACAAATACCCCAGGCGGT
LOC_Os03g19840
Os.28566.1.S1_at--520--10831Chr03:11140223..11140247 (25 bp)
TTGTGAACATCTACGGGCTGTCGCA
LOC_Os03g19840
Os.28566.1.S1_at--22--5011Chr03:11140173..11140197 (25 bp)
GCATGTGCCCAATGCCTGTCGACGG
LOC_Os03g19840
Os.28566.1.S1_at--812--7111Chr03:11140106..11140130 (25 bp)
GTCAGATCGAATACAGCACCTGTTG
LOC_Os03g19840
Os.28566.1.S1_at--1110--10471Chr03:11140059..11140083 (25 bp)
TTCTATTTTCCGCTCAAGACTGACG
LOC_Os03g19840
Os.28566.1.S1_at--911--1391Chr03:11140043..11140067 (25 bp)
AGACTGACGGGCGAGCCACCACTGA
LOC_Os03g19840
Os.28566.1.S1_at--707--7031Chr03:11140009..11140033 (25 bp)
GTACACCAAGGTCGTTGTGCACTGA
LOC_Os03g19840
Os.28566.1.S1_at--297--10411Chr03:11139902..11139926 (25 bp)
TTATATGACCTCTTTGCCACGATTT
LOC_Os03g19840
Target Sequence 
TGCCACTATGCATCGGACTCCAGGATGTGGTATGACTACTGCTTCATGCGGTACAAGAACGCCAACTTCATTGGACAGGT
GGACACGAGGGTGGACGCCAGCGTAAGAATTAGGAAAGAAGAAAACATGGACAACCCTAAGACGTTCCAAAAGGTGGTGG
CGAAGACGATGGACAAATACCCCAGGCGGTGGCGACCGCGGGGAGTGCCGCATTGGGAAGGGTGAAGGAAAAATACATGA
CGTTTGTGAACATCTACGGGCTGTCGCAGTGCACGCGGGATCTAGCACCGCTGGCATGTGCCCAATGCCTGTCGACGGCA
GTGTCCGACTTCGGCGACATCTGCAACGCCGCGGAGGGATGTCAGATCGAATACAGCACCTGTTGGGTGCGCTACGAGAT
TTACCCCTTCTATTTTCCGCTCAAGACTGACGGGCGAGCCACCACTGACATGACGAAGTACACCAAGGTCGTTGTGCACT
GATAATTAAGTTTACAACTAGTTATGTAAAGGATTATGTTGTAACGCGTAGCAATATACATATAATTAATTTGTGGGTGA
GATCTTATATGACCTCTTTGCCACGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28566.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis