Browse Element(s) Details


Os.12831.1.S1_at

Description gb:AK068580.1
DB_XREF= gi:32978597
TID=Os.12831.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12831 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013157B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157B08, full insert sequence.
FL= gb:AK068580.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1989010/11ETC complex I subunit conserved region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19820OsAffx.25151.1.S1_at11/113+11135454..11135837hypothetical protein
LOC_Os03g19830OsAffx.12945.1.S1_at11/113+11137208..11137672hypothetical protein
LOC_Os03g19840Os.28566.1.S1_at11/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19840Os.27455.2.S1_at2/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19840Os.47130.4.A1_x_at2/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19850OsAffx.25152.1.S1_at11/113+11147034..11147501expressed protein
LOC_Os03g19860Os.54749.1.S2_at11/113+11148696..11150211expressed protein
LOC_Os03g19860Os.54749.1.S1_at11/113+11148696..11150211expressed protein
LOC_Os03g19870Os.14774.1.S1_s_at11/113+11150478..11156838XPA-binding protein 1, putative, expressed
LOC_Os03g19870Os.14774.2.S1_at10/113+11150478..11156838XPA-binding protein 1, putative, expressed
LOC_Os03g19880OsAffx.12947.1.S1_at11/113+11157118..11157489hypothetical protein
LOC_Os03g19890Os.12831.1.S1_at10/113+11159816..11162760ETC complex I subunit conserved region family protein, expressed
LOC_Os03g19900Os.56314.1.S1_at4/113+11163340..11168139AP2 domain containing protein
LOC_Os03g19910OsAffx.25153.1.S1_at11/113+11176061..11176843hypothetical protein
LOC_Os03g19920OsAffx.12948.1.S1_at11/113+11178765..11183846Poly polymerase central domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12831.1.S1_at--773--4391NONE
GCCAAGATGATCGAATGGGACCCAT
NONE
Os.12831.1.S1_at--908--5351Chr03:11162367..11162391 (25 bp)
GAAGATGACACACTTATCCCGAAAC
LOC_Os03g19890
Os.12831.1.S1_at--528--10431Chr03:11162380..11162404 (25 bp)
TTATCCCGAAACATGTTCCGCAGCA
LOC_Os03g19890
Os.12831.1.S1_at--423--6071Chr03:11162427..11162451 (25 bp)
GAGTTCTTCAAGACACTAGATGCTG
LOC_Os03g19890
Os.12831.1.S1_at--392--6351Chr03:11162445..11162469 (25 bp)
GATGCTGTCAAATCTGATCCTGCTC
LOC_Os03g19890
Os.12831.1.S1_at--248--1051Chr03:11162473..11162497 (25 bp)
AGGGTGAGTCTCCTCCTCAAGTGAA
LOC_Os03g19890
Os.12831.1.S1_at--385--1371Chr03:11162505..11162529 (25 bp)
AGACGTGAACTCTCCAAGATCTACC
LOC_Os03g19890
Os.12831.1.S1_at--869--2791Chr03:11162520..11162544 (25 bp)
AAGATCTACCATTTGCACCATTTTG
LOC_Os03g19890
Os.12831.1.S1_at--1014--10731Chr03:11162532..11162556 (25 bp)
TTGCACCATTTTGCTGCGTGGAGTA
LOC_Os03g19890
Os.12831.1.S1_at--835--1471Chr03:11162588..11162612 (25 bp)
AGCAATATTTGCTTGGTTGTTCCAA
LOC_Os03g19890
Os.12831.1.S1_at--348--2251Chr03:11162620..11162644 (25 bp)
AAAGTTCTACCGAGCACTACAAAGA
LOC_Os03g19890
Target Sequence 
GCCAAGATGATCGAATGGGACCCATGGGGTGTTCCTGATGACTATGAATGCGAGGTTATTGAAGATGACACACTTATCCC
GAAACATGTTCCGCAGCATCGGCCTGTTGCACTCCCTGAGGAGTTCTTCAAGACACTAGATGCTGTCAAATCTGATCCTG
CTCTGCAGGGTGAGTCTCCTCCTCAAGTGAANCCATAAAGACGTGAACTCTCCAAGATCTACCATTTGCACCATTTTGCT
GCGTGGAGTAGACTATAGATTAGTTTCATGTGTTCTTTGCCAGCAATATTTGCTTGGTTGTTCCAAGCAGAATAAAGTTC
TACCGAGCACTACAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12831.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis