Browse Element(s) Details


Os.56314.1.S1_at

Description gb:AK109839.1
DB_XREF= gi:32995048
TID=Os.56314.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56314 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-148-D11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-148-D11, full insert sequence.
FL= gb:AK109839.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g199004/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19840Os.28566.1.S1_at11/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19840Os.27455.2.S1_at2/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19840Os.47130.4.A1_x_at2/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19850OsAffx.25152.1.S1_at11/113+11147034..11147501expressed protein
LOC_Os03g19860Os.54749.1.S2_at11/113+11148696..11150211expressed protein
LOC_Os03g19860Os.54749.1.S1_at11/113+11148696..11150211expressed protein
LOC_Os03g19870Os.14774.1.S1_s_at11/113+11150478..11156838XPA-binding protein 1, putative, expressed
LOC_Os03g19870Os.14774.2.S1_at10/113+11150478..11156838XPA-binding protein 1, putative, expressed
LOC_Os03g19880OsAffx.12947.1.S1_at11/113+11157118..11157489hypothetical protein
LOC_Os03g19890Os.12831.1.S1_at10/113+11159816..11162760ETC complex I subunit conserved region family protein, expressed
LOC_Os03g19900Os.56314.1.S1_at4/113+11163340..11168139AP2 domain containing protein
LOC_Os03g19910OsAffx.25153.1.S1_at11/113+11176061..11176843hypothetical protein
LOC_Os03g19920OsAffx.12948.1.S1_at11/113+11178765..11183846Poly polymerase central domain containing protein, expressed
LOC_Os03g19930Os.35451.1.S1_at11/113+11189599..11193778Adenylosuccinate lyase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007389biological_processpattern specification
GO:0009887biological_processorgan morphogenesis
GO:0019827biological_processstem cell maintenance
GO:0048364biological_processroot development
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56314.1.S1_at--67--8011Chr03:11163621..11163645 (25 bp)
GGAGGCCAAATCACTCTGATGAGCA
LOC_Os03g19900
Os.56314.1.S1_at--734--6391Chr03:11163452..11163476 (25 bp)
GATCGTACAACTTTGCAGAGCCAGT
LOC_Os03g19900
Os.56314.1.S1_at--147--7891Chr03:11163388..11163412 (25 bp)
GGTTCAGCTCAACAGCAACATGGTT
LOC_Os03g19900
Os.56314.1.S1_at--796--7491Chr03:11163353..11163377 (25 bp)
GTGGTGGCTTTCTTCATCTGGCCAA
LOC_Os03g19900
Os.56314.1.S1_at--1103--3171Chr03:11163303..11163327 (25 bp)
CAATTGCTGGTGTTGTGTGGTTCTT
NONE
Os.56314.1.S1_at--429--3831Chr03:11163217..11163241 (25 bp)
CTGCTGCCATGGACTAACAACCTGA
NONE
Os.56314.1.S1_at--48--7371Chr03:11163171..11163195 (25 bp)
GTGAACTTGACTATGCTCGTTACAA
NONE
Os.56314.1.S1_at--591--3271Chr03:11163149..11163173 (25 bp)
CAACAACAGTGGGTCTAAGCTCAAA
NONE
Os.56314.1.S1_at--501--2291Chr03:11163126..11163150 (25 bp)
AAATGAGCTTGTGGTATGCCCCAGA
NONE
Os.56314.1.S1_at--356--6911Chr03:11163113..11163137 (25 bp)
GTATGCCCCAGATATGCTTAGTTGT
NONE
Os.56314.1.S1_at--866--7891Chr03:11163059..11163084 (25 bp)
GGTTCATACTTTCTACCATGTTGTA
NONE
Target Sequence 
GGAGGCCAAATCACTCTGATGAGCAGCCCGCCGATCTCCCAGCAGTCGAGCAGCGCGCCACCGTATCTCATCCACAACCT
CCTGCAGTTCCAGCCATGTGGTCCCCCATACGCACCACCACCACCACCACCACCACCACCACCACCACAGGCTCTTCCGC
TGCCAGGATCGTACAACTTTGCAGAGCCAGTAGGCTTCTACTGGCCCTACGGCGATGGGGAGGAGCAGAAGGTTCAGCTC
AACAGCAACATGGTTGGAATGGCTAGTGGTGGCTTTCTTCATCTGGCCAATGCTGCCAACTGATCCCAGCGTCTGCAATT
GCTGGTGTTGTGTGGTTCTTGTGGAGATTCCGAGGGAGTGAGATTTTGGGTGGATATAGGAAGGGGGTCTTTTGGCTTTT
GCTGCTGCCATGGACTAACAACCTGAACATAGATAACAGCTGGAGTAGTGAACTTGACTATGCTCGTTACAACAACAGTG
GGTCTAAGCTCAAAATGAGCTTGTGGTATGCCCCAGATATGCTTAGTTGTTAATTAATGGTTTATTTTGAACAAAAGTGG
TTCATACTTTCTACCATGTTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis