Browse Element(s) Details


Os.14774.2.S1_at

Description gb:AK073391.1
DB_XREF= gi:32983414
TID=Os.14774.2
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14774 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033042P15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033042P15, full insert sequence.
FL= gb:AK073391.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1987010/11XPA-binding protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g19800NANA3+11125162..11126244hypothetical protein
LOC_Os03g19810OsAffx.3278.1.S1_at11/113+11132765..11134146hypothetical protein
LOC_Os03g19820OsAffx.25151.1.S1_at11/113+11135454..11135837hypothetical protein
LOC_Os03g19830OsAffx.12945.1.S1_at11/113+11137208..11137672hypothetical protein
LOC_Os03g19840Os.28566.1.S1_at11/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19840Os.27455.2.S1_at2/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19840Os.47130.4.A1_x_at2/113+11139901..1114352333 kDa secretory protein, putative, expressed
LOC_Os03g19850OsAffx.25152.1.S1_at11/113+11147034..11147501expressed protein
LOC_Os03g19860Os.54749.1.S2_at11/113+11148696..11150211expressed protein
LOC_Os03g19860Os.54749.1.S1_at11/113+11148696..11150211expressed protein
LOC_Os03g19870Os.14774.1.S1_s_at11/113+11150478..11156838XPA-binding protein 1, putative, expressed
LOC_Os03g19870Os.14774.2.S1_at10/113+11150478..11156838XPA-binding protein 1, putative, expressed
LOC_Os03g19880OsAffx.12947.1.S1_at11/113+11157118..11157489hypothetical protein
LOC_Os03g19890Os.12831.1.S1_at10/113+11159816..11162760ETC complex I subunit conserved region family protein, expressed
LOC_Os03g19900Os.56314.1.S1_at4/113+11163340..11168139AP2 domain containing protein
LOC_Os03g19910OsAffx.25153.1.S1_at11/113+11176061..11176843hypothetical protein
LOC_Os03g19920OsAffx.12948.1.S1_at11/113+11178765..11183846Poly polymerase central domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14774.2.S1_at--169--231Chr03:11153282..11153306 (25 bp)
ATATTGCTCCGCTGGAATCTGAGTT
LOC_Os03g19870
Os.14774.2.S1_at--597--2991Chr03:11153312..11153336 (25 bp)
AATGTACTCACTTGCAGAGCTCTAT
LOC_Os03g19870
Os.14774.2.S1_at--762--3051Chr03:11153347..11153371 (25 bp)
AATCTGAGTATGGTGTTTCTCTGTT
LOC_Os03g19870
Os.14774.2.S1_at--139--6771Chr03:11153403..11153427 (25 bp)
GTTAATCGCTGTTACTATCTAGTTA
LOC_Os03g19870
Os.14774.2.S1_at--642--5431Chr03:11153435..11153459 (25 bp)
GAACCTGCAATTTATAGTCTTTTAG
LOC_Os03g19870
Os.14774.2.S1_at--719--831Chr03:11153482..11153506 (25 bp)
ATGGATGATTGCCATGCCTCATGAA
LOC_Os03g19870
Os.14774.2.S1_at--52--5531Chr03:11153504..11153528 (25 bp)
GAAAAGCTTGTGCACTCATCTACAT
LOC_Os03g19870
Os.14774.2.S1_at--662--451Chr03:11153521..11153545 (25 bp)
ATCTACATATAGTTTCTTGCACTTA
LOC_Os03g19870
Os.14774.2.S1_at--755--2331NONE
AAAGAGTCGTTCTTTTGTGTGGCTA
NONE
Os.14774.2.S1_at--1040--10351Chr03:11153576..11153600 (25 bp)
TTTTGTGTGGCTATAACCTCCCTCT
LOC_Os03g19870
Os.14774.2.S1_at--704--2631Chr03:11153590..11153614 (25 bp)
AACCTCCCTCTTTATTGAATATGCT
LOC_Os03g19870
Target Sequence 
ATATTGCTCCGCTGGAATCTGAGTTNCCCTAATGTACTCACTTGCAGAGCTCTATTAAATTTATTAATCTGAGTATGGTG
TTTCTCTGTTNCAGATACTTGAATGTCATTTTGCTTTGAATGTTAATCGCTGTTACTATCTAGTTATTCATTTGAACCTG
CAATTTATAGTCTTTTAGCAACTAATAGTATTGCATACACATGGATGATTGCCATGCCTCATGAAAAGCTTGTGCACTCA
TCTACATATAGTTTCTTGCACTTAATATGTAATAACTAGCCTAAAGAGTCGTTCTTTTGTGTGGCTATAACCTCCCTCTT
TATTGAATATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14774.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis