Browse Element(s) Details


Os.18714.1.S2_at

Description gb:AK067578.1
DB_XREF= gi:32977596
TID=Os.18714.1
CNT=26
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18714 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative nodulin-like protein (OSJNBa0082N11.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110M15, full insert sequence.
FL= gb:AK067578.1 gb:AK062163.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1492011/11nodulin MtN21 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g14889Os.41248.2.A1_at4/1110+7545418..7548042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14889Os.39814.1.S1_at3/1110+7545418..7548042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14889Os.41248.5.S1_x_at1/1110+7545418..7548042retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14900OsAffx.302.1.S1_at11/1110+7552652..7553059retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g14920Os.18714.1.S2_at11/1110+7566080..7572543nodulin MtN21 family protein, putative, expressed
LOC_Os10g14920Os.18714.1.S1_a_at11/1110+7566080..7572543nodulin MtN21 family protein, putative, expressed
LOC_Os10g14920OsAffx.28912.1.S1_at1/1110+7566080..7572543nodulin MtN21 family protein, putative, expressed
LOC_Os10g14930OsAffx.19950.1.S1_at1/1110+7583488..7585622Zinc knuckle family protein
LOC_Os10g14940NANA10+7586481..7587092hypothetical protein
LOC_Os10g14950NANA10+7588776..7591273retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14960OsAffx.8341.1.S1_at11/1110+7592733..7593869retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14970OsAffx.8340.1.S1_at11/1110+7594296..7595753retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14980OsAffx.20590.1.S1_at11/1110+7596656..7598625retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18714.1.S2_at--86--892Chr05:1335820..1335937 (25 bp)
AGGCCAAGATTCTCGGTGATCTCCC
NONE
Os.18714.1.S2_at--429--10831Chr10:7567670..7567694 (25 bp)
TTGGATTCGGATTCGTCGGCACCTC
LOC_Os10g14920
Os.18714.1.S2_at--472--9451Chr10:7567656..7567679 (24 bp)
TCGGCACCTCTCCATTTGATTCAGA
LOC_Os10g14920
Os.18714.1.S2_at--632--251Chr10:7566452..7566476 (25 bp)
ATATCTGTCATCTGTGATCTTCCTA
LOC_Os10g14920
Os.18714.1.S2_at--134--6431Chr10:7566437..7566461 (25 bp)
GATCTTCCTATGCTCGAGGACCATG
LOC_Os10g14920
Os.18714.1.S2_at--741--5971Chr10:7566412..7566436 (25 bp)
GAGAACTTCAGCTTTTCAATGGCAT
LOC_Os10g14920
Os.18714.1.S2_at--260--1691Chr10:7566379..7566403 (25 bp)
AGCCATGCAGCTAGAGGGTTTGTGA
LOC_Os10g14920
Os.18714.1.S2_at--863--851Chr10:7566355..7566379 (25 bp)
ATGGCTGTTTGCTTTGATTCAGTGA
LOC_Os10g14920
Os.18714.1.S2_at--321--3092Chr11:3337345..3337369 (25 bp)
AATAATGCCTCTTGCTTTGTTTCAT
NONE
Os.18714.1.S2_at--317--7431Chr10:7566165..7566189 (25 bp)
GTGTTTCATGTCATCTCAAGTTCCC
LOC_Os10g14920
Os.18714.1.S2_at--414--6711Chr10:7566146..7566170 (25 bp)
GTTCCCATCTGCATATTTCCTAAAA
LOC_Os10g14920
Target Sequence 
AGGCCAAGATTCTCGGTGATCTCCCCGCCGGCCGCCTGCCCTCCTTGTGCATGGAGTCACCGACCCTCGTCTGATTTGGA
TTCGGATTCGTCGGCACCTCTCCATTTGATTCAGAGGAGTGGAGGCGACAGTAGAAGTTTCCATACTGGAATTCGTCAGT
GGTTTTGATATATCTGTCATCTGTGATCTTCCTATGCTCGAGGACCATGGAGAACTTCAGCTTTTCAATGGCATTATTGG
TGAGCCATGCAGCTAGAGGGTTTGTGATGGCTGTTTGCTTTGATTCAGTGATGCATTAGAAATTGAAGTTGTCCATGCAC
TGACTGAAGAACATCAATTCAGATACTTGAAGCTACTGAACTCAATAATGCCTCTTGCTTTGTTTCATTGTGGATAATTG
TTCTCCTATTAGAACAGTAGAGTTTGAGATATTATATCATTTATATGCAATGCAATGTGTTTCATGTCATCTCAAGTTCC
CATCTGCATATTTCCTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18714.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis