Browse Element(s) Details


Os.18748.1.S1_at

Description gb:AK102383.1
DB_XREF= gi:32987592
TID=Os.18748.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18748 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033092C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033092C12, full insert sequence.
FL= gb:AK102383.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g130307/11LIM domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g12990OsAffx.27596.1.S1_at11/116+7118075..7119404expressed protein
LOC_Os06g12990Os.13757.1.S1_at11/116+7118075..7119404expressed protein
LOC_Os06g13000OsAffx.27597.1.S1_at11/116+7120121..7122027Ankyrin repeat protein, chloroplast precursor, putative, expressed
LOC_Os06g13010OsAffx.27598.1.S1_at10/116+7124667..7126893RNase H domain-containing protein, putative, expressed
LOC_Os06g13020OsAffx.983.1.S1_at10/116+7127121..7132516DNA polymerase lambda, putative, expressed
LOC_Os06g13030Os.18748.1.S1_at7/116+7132792..7139004LIM domain containing protein, expressed
LOC_Os06g13040OsAffx.15401.1.S1_at10/116+7143532..7145046Glycosyl hydrolases family 16 protein, expressed
LOC_Os06g13050OsAffx.27599.1.S1_at11/116+7147962..7157823Peroxidase family protein, expressed
LOC_Os06g13050Os.26702.1.A1_s_at4/116+7147962..7157823Peroxidase family protein, expressed
LOC_Os06g13060OsAffx.4821.1.S1_at11/116+7159388..7163157Chaperone protein dnaJ 16, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18748.1.S1_at--155--911NONE
AGGCGAGTGCCAAGCCATCTGAGGA
NONE
Os.18748.1.S1_at--777--8951NONE
TGACAGTGCCAAGCCATCAGAGGAT
NONE
Os.18748.1.S1_at--763--1691Chr06:7133259..7133283 (25 bp)
AGCCAGAGGCTCACAAACCATCAGA
LOC_Os06g13030
Os.18748.1.S1_at--1061--2831NONE
AAGTCATCACCGGAGGATGCCGCCG
NONE
Os.18748.1.S1_at--686--6211Chr06:7133186..7133209 (24 bp)
GAGGCGCCATTGCAAGGTGACACAA
LOC_Os06g13030
Os.18748.1.S1_at--991--5611Chr06:7133149..7133173 (25 bp)
GACAAACCCTCACTAGAAGCAGACA
LOC_Os06g13030
Os.18748.1.S1_at--164--2151Chr06:7133122..7133146 (25 bp)
ACAGAAACTGCCTGAGCTGGTTACA
LOC_Os06g13030
Os.18748.1.S1_at--866--7031Chr06:7133083..7133107 (25 bp)
GTACACAGTTTTTAACCCAGATGGG
LOC_Os06g13030
Os.18748.1.S1_at--874--7711Chr06:7133061..7133085 (25 bp)
GGGTGGATACTACTGTTGATACTTT
LOC_Os06g13030
Os.18748.1.S1_at--532--7871Chr06:7133036..7133060 (25 bp)
GGTTTGCCATTTTGCTTGTTTTCTT
LOC_Os06g13030
Os.18748.1.S1_at--507--531NONE
AAGCCCCTCCCCATATTAGGAGGAG
NONE
Target Sequence 
AGGCGAGTGCCAAGCCATCTGAGGACAGTGTGGNTCTTGATAAGCTATCAGTGGAAGATGATGACAGTGCCAAGCCATCA
GAGGATAGCATGGATCTTGAAAAGCCAGAGGCTCACAAACCATCAGAGGAAGAAGAAGATAGCGCGGCCAAGTCATCACC
GGAGGATGCCGCCGTTGAGGAGGCGCCATTGCAAGGTGACACAAAAACGGCCACTGACAAACCCTCACTAGAAGCAGACA
CCACAGAAACTGCCTGAGCTGGTTACAGTTAGTTAGCAACAGTACACAGTTTTTAACCCAGATGGGTGGATACTACTGTT
GATACTTTGGTTTGCCATTTTGCTTGTTTTCTTGTTTTGTACAATGCTTGAGTTGTAAAATTTGAGGGAAAACAGAAAAG
GAACTATAGGTATTGATTTNGATTTGCTCACAAGCAATAAGCCCCTCCCCATATTAGGAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18748.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis