Browse Element(s) Details


Os.18769.1.S1_at

Description gb:AK070398.1
DB_XREF= gi:32980422
TID=Os.18769.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.18769 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023048G06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023048G06, full insert sequence.
FL= gb:AK065765.1 gb:AK070398.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1417011/11PQQ enzyme repeat-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g14150NANA5+7886093..7886581Polygalacturonase precursor, putative
LOC_Os05g14160OsAffx.26877.1.S1_at10/115+7888945..7894995hypothetical protein
LOC_Os05g14170Os.18769.1.S1_at11/115+7906427..7915722PQQ enzyme repeat-containing protein, putative, expressed
LOC_Os05g14180Os.11876.1.S1_s_at11/115+7930186..7933694Auxin-responsive protein IAA9, putative, expressed
LOC_Os05g14194Os.22487.1.S1_at11/115+7939353..7946068Lactoylglutathione lyase, putative, expressed
LOC_Os05g14194OsAffx.4331.1.S1_at10/115+7939353..7946068Lactoylglutathione lyase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18769.1.S1_at--275--6091Chr05:7915139..7915163 (25 bp)
GAGTCAACTACTCTTGTTTTCACAT
LOC_Os05g14170
Os.18769.1.S1_at--340--6431Chr05:7915172..7915196 (25 bp)
GATCTTTTCTATACTCAGCTTGCTC
LOC_Os05g14170
Os.18769.1.S1_at--237--8871Chr05:7915222..7915246 (25 bp)
TGATGAGTTCAGCTACGCGCTTCTA
LOC_Os05g14170
Os.18769.1.S1_at--538--3631Chr05:7915241..7915265 (25 bp)
CTTCTACTCATCACAATTGCTGCAT
LOC_Os05g14170
Os.18769.1.S1_at--141--8871Chr05:7915335..7915359 (25 bp)
TGAGGCCTCAACACGATGCAGATGG
LOC_Os05g14170
Os.18769.1.S1_at--1114--3531Chr05:7915378..7915402 (25 bp)
CATCCCTTTTCTTTTGCCATTTTTG
LOC_Os05g14170
Os.18769.1.S1_at--1030--10791Chr05:7915400..7915424 (25 bp)
TTGTTTGTAGTGGTAGCCTCTGCTA
LOC_Os05g14170
Os.18769.1.S1_at--832--9051Chr05:7915420..7915444 (25 bp)
TGCTAGGGTCCATGTCACTTTTGAC
LOC_Os05g14170
Os.18769.1.S1_at--1099--5671Chr05:7915442..7915466 (25 bp)
GACTAGGCCTTTCTTTATGTAACCA
LOC_Os05g14170
Os.18769.1.S1_at--754--431Chr05:7915466..7915490 (25 bp)
ATCTTCTGGGATGACACTCTTTTAA
LOC_Os05g14170
Os.18769.1.S1_at--248--7151Chr05:7915491..7915515 (25 bp)
GTCTTATAGAAAGCCTCCTGTGCGA
LOC_Os05g14170
Target Sequence 
GAGTCAACTACTCTTGTTTTCACATATGGTGTAGATCTTTTCTATACTCAGCTTGCTCCCTCAAGAACCTATGACTCACT
AACTGATGAGTTCAGCTACGCGCTTCTACTCATCACAATTGCTGCATTGGTTGCTGCCATTGTTGTTACTTGGATTTGGT
CTGAGAAAAAGGAGTTAAGAGATAAGTGGAGGTAAGTGAGGCCTCAACACGATGCAGATGGATTTCGGGCCCTAGTCAGC
ATCCCTTTTCTTTTGCCATTTTTGTTTGTAGTGGTAGCCTCTGCTAGGGTCCATGTCACTTTTGACTAGGCCTTTCTTTA
TGTAACCATCTTCTGGGATGACACTCTTTTAAGTCTTATAGAAAGCCTCCTGTGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18769.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis