Browse Element(s) Details


Os.18822.1.A1_at

Description gb:AK109471.1
DB_XREF= gi:32994680
TID=Os.18822.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.18822 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) enoyl CoA hydratase-like protein (P0482D04.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-E06, full insert sequence.
FL= gb:AK109471.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7009011/11enoyl-CoA hydratase/isomerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70060OsAffx.1108.1.S1_at10/111+40867830..40881600expressed protein
LOC_Os01g70060Os.7001.1.S1_at10/111+40867830..40881600expressed protein
LOC_Os01g70060Os.46177.1.S1_x_at8/111+40867830..40881600expressed protein
LOC_Os01g70080Os.50370.1.S1_at11/111+40882961..40888210NB-ARC domain containing protein, expressed
LOC_Os01g70080Os.47363.1.A1_at4/111+40882961..40888210NB-ARC domain containing protein, expressed
LOC_Os01g70090Os.18822.1.A1_at11/111+40890382..40893189enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os01g70100Os.22715.1.S1_at10/111+40893532..40896618DHHC zinc finger domain containing protein, expressed
LOC_Os01g70110Os.14047.2.S1_x_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.1.S1_a_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.2.S1_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.1.S1_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70120Os.34730.1.S1_at11/111+40911232..40912316expressed protein
LOC_Os01g70120Os.34730.2.S1_x_at10/111+40911232..40912316expressed protein
LOC_Os01g70130Os.11784.1.S1_at11/111+40912299..40918122Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006631biological_processfatty acid metabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0007275biological_processdevelopment
GO:0008152biological_processmetabolism
GO:0009062biological_processfatty acid catabolism
GO:0009845biological_processseed germination
GO:0009908biological_processflower development
GO:0042371biological_processvitamin K biosynthesis
GO:0005777cellular_componentperoxisome
GO:0003824molecular_functioncatalytic activity
GO:0004300molecular_functionenoyl-CoA hydratase activity
GO:0008935molecular_functionnaphthoate synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18822.1.A1_at--780--3291Chr01:40892589..40892613 (25 bp)
CAAAGGCTGTTTTGCTGAGAAGCAG
LOC_Os01g70090
Os.18822.1.A1_at--1101--5011Chr01:40892629..40892653 (25 bp)
GCAGGGCCTGGAGCATGTTGCAACA
LOC_Os01g70090
Os.18822.1.A1_at--1110--9011Chr01:40892647..40892671 (25 bp)
TGCAACATGGAACGCCGCAATGCTG
LOC_Os01g70090
Os.18822.1.A1_at--273--4111Chr01:40892662..40892686 (25 bp)
CGCAATGCTGAGATCTAATGACCTG
LOC_Os01g70090
Os.18822.1.A1_at--789--9751Chr01:40892677..40892701 (25 bp)
TAATGACCTGGAGGAGGCTATCCAA
LOC_Os01g70090
Os.18822.1.A1_at--549--8291Chr01:40892692..40892716 (25 bp)
GGCTATCCAAGCCTTCCTAGAGAAG
LOC_Os01g70090
Os.18822.1.A1_at--130--5411Chr01:40892713..40892737 (25 bp)
GAAGCGGAAGCCAGTCTTCTCCAAA
LOC_Os01g70090
Os.18822.1.A1_at--71--7151Chr01:40892726..40892750 (25 bp)
GTCTTCTCCAAACTGTAATGATCAT
LOC_Os01g70090
Os.18822.1.A1_at--1034--7331Chr01:40892843..40892867 (25 bp)
GTGAAGAGCTTACACTTAGTACAGT
LOC_Os01g70090
Os.18822.1.A1_at--727--8511Chr01:40892867..40892891 (25 bp)
TGGACCAGAAATGCTTCCAATCAAT
LOC_Os01g70090
Os.18822.1.A1_at--767--6411Chr01:40892900..40892924 (25 bp)
GATCTCCAACATGTTGCTGCTTTGT
LOC_Os01g70090
Target Sequence 
CAAAGGCTGTTTTGCTGAGAAGCAGGGATATAACAGTAGAGCAGGGCCTGGAGCATGTTGCAACATGGAACGCCGCAATG
CTGAGATCTAATGACCTGGAGGAGGCTATCCAAGCCTTCCTAGAGAAGCGGAAGCCAGTCTTCTCCAAACTGTAATGATC
ATACNCCATACTTGACAGAAGAAAGTTATATTTGAATCCTAGTACTTCAGAATAAGGGAAAGGCTATAAATNTATGATTG
CAGTTGGCAAATATGTGAAGAGCTTACACTTAGTACAGTGGACCAGAAATGCTTCCAATCAATGCATCAAAGATCTCCAA
CATGTTGCTGCTTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18822.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis