Browse Element(s) Details


Os.47363.1.A1_at

Description gb:NM_189968.1
DB_XREF= gi:34907019
GEN=P0482D04.3
TID=Os.47363.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.47363 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative disease resistance protein (P0482D04.3), mRNA.
PROD=putative disease resistance protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g700804/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70060OsAffx.1108.1.S1_at10/111+40867830..40881600expressed protein
LOC_Os01g70060Os.7001.1.S1_at10/111+40867830..40881600expressed protein
LOC_Os01g70060Os.46177.1.S1_x_at8/111+40867830..40881600expressed protein
LOC_Os01g70080Os.50370.1.S1_at11/111+40882961..40888210NB-ARC domain containing protein, expressed
LOC_Os01g70080Os.47363.1.A1_at4/111+40882961..40888210NB-ARC domain containing protein, expressed
LOC_Os01g70090Os.18822.1.A1_at11/111+40890382..40893189enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os01g70100Os.22715.1.S1_at10/111+40893532..40896618DHHC zinc finger domain containing protein, expressed
LOC_Os01g70110Os.14047.2.S1_x_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.1.S1_a_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.2.S1_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.1.S1_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70120Os.34730.1.S1_at11/111+40911232..40912316expressed protein
LOC_Os01g70120Os.34730.2.S1_x_at10/111+40911232..40912316expressed protein
LOC_Os01g70130Os.11784.1.S1_at11/111+40912299..40918122Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47363.1.A1_at--1151--2171Chr01:40883412..40883436 (25 bp)
ACACGGCTGTCGATGTGGAGCACGA
LOC_Os01g70080
Os.47363.1.A1_at--960--8331Chr01:40883192..40883216 (25 bp)
GGCTGACGCTGTTCGGGTGCCTCAA
LOC_Os01g70080
Os.47363.1.A1_at--370--9431Chr01:40883180..40883204 (25 bp)
TCGGGTGCCTCAAGATGCGGATGCT
LOC_Os01g70080
Os.47363.1.A1_at--1102--7111Chr01:40883034..40883058 (25 bp)
GTCATCCAGACCATCTGGTAGCTTT
LOC_Os01g70080
Os.47363.1.A1_at--349--3911NONE
CTGGTAGCTTTGGTTCAGCTCTGGA
NONE
Os.47363.1.A1_at--234--3111NONE
AATTTTGAACGTGCCAATGTACCAT
NONE
Os.47363.1.A1_at--631--2991NONE
AATGTACCATGATCGCAGCTTGCAT
NONE
Os.47363.1.A1_at--436--531NONE
ATCGCAGCTTGCATGTAGACTTGAA
NONE
Os.47363.1.A1_at--971--2111NONE
ACAGTGTGGTAGTGTTTCTATATCA
NONE
Os.47363.1.A1_at--755--6891NONE
GTATACACTTTCTATGGCAACACAT
NONE
Os.47363.1.A1_at--288--5151NONE
GCAACACATCATGGGCCAATGGCCA
NONE
Target Sequence 
ACACGGCTGTCGATGTGGAGCACGATGGTGGGGCAGAAGTTCGTGGACATGCTGGGGGAGCTCCCGAGCTTGGCGGAGCT
GACGCTGATGGTGGCGGCGTTCGACGGCGAGCGGCTGGAGTTCCGGGACGGCGGGTTCCGGAGCCTGCAGAAGCTGAAGC
TGGGCCTGCCGGAACTGGAGGAGTGGACGGTGAAGGCCGGGGCCATGGCGTCGCTGGCGAGGCTGACGCTGTTCGGGTGC
CTCAAGATGCGGATGCTGCCGGAGGCGCTCGCCGGGATACCGGAGCTGGAGGAGGTGGTGCTGTACAGAANGCCGANCAT
GGTGGAGAGGATCAAGAAGCACGGCGGGGAGGATCNACCACAAGGTCAAGCACGTCCCCGTCATCCAGACCATCTGGTAG
CTTTGGTTCAGCTCTGGACNAATTTTGAACGTGCCAATGTACCATGATCGCAGCTTGCATGTAGACTTGAACAGTGTGGT
AGTGTTTCTATATCAATAGTTTTTTATGTATACACTTTCTATGGCAACACATCATGGGCCAATGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47363.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis