Browse Element(s) Details


Os.22715.1.S1_at

Description gb:AK103046.1
DB_XREF= gi:32988255
TID=Os.22715.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22715 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 3, At3g02290 (P0482D04.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117G06, full insert sequence.
FL= gb:AK103046.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7010010/11DHHC zinc finger domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g70060OsAffx.1108.1.S1_at10/111+40867830..40881600expressed protein
LOC_Os01g70060Os.7001.1.S1_at10/111+40867830..40881600expressed protein
LOC_Os01g70060Os.46177.1.S1_x_at8/111+40867830..40881600expressed protein
LOC_Os01g70080Os.50370.1.S1_at11/111+40882961..40888210NB-ARC domain containing protein, expressed
LOC_Os01g70080Os.47363.1.A1_at4/111+40882961..40888210NB-ARC domain containing protein, expressed
LOC_Os01g70090Os.18822.1.A1_at11/111+40890382..40893189enoyl-CoA hydratase/isomerase family protein, expressed
LOC_Os01g70100Os.22715.1.S1_at10/111+40893532..40896618DHHC zinc finger domain containing protein, expressed
LOC_Os01g70110Os.14047.2.S1_x_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.1.S1_a_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.2.S1_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70110Os.14047.1.S1_at11/111+40899671..40900830No apical meristem protein, expressed
LOC_Os01g70120Os.34730.1.S1_at11/111+40911232..40912316expressed protein
LOC_Os01g70120Os.34730.2.S1_x_at10/111+40911232..40912316expressed protein
LOC_Os01g70130Os.11784.1.S1_at11/111+40912299..40918122Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22715.1.S1_at--613--3791Chr01:40893972..40893996 (25 bp)
CTCGCAATCGGAGGCCTGGATGATC
LOC_Os01g70100
Os.22715.1.S1_at--965--7951Chr01:40893945..40893969 (25 bp)
GGATCCTCAGTGATGAACCCAGGGC
LOC_Os01g70100
Os.22715.1.S1_at--824--5691Chr01:40893848..40893872 (25 bp)
GACTCAGGGATTTTTAGTGCCGGCT
LOC_Os01g70100
Os.22715.1.S1_at--500--1131Chr01:40893833..40893857 (25 bp)
AGTGCCGGCTTGTTGCTAATTTGGT
LOC_Os01g70100
Os.22715.1.S1_at--817--7091Chr01:40893789..40893813 (25 bp)
GTCACTGATGTTCTTAGGCCTATGA
LOC_Os01g70100
Os.22715.1.S1_at--239--5851NONE
GACCTTGGCTGGTTGATTTCACATT
NONE
Os.22715.1.S1_at--717--10511Chr01:40893749..40893773 (25 bp)
TTCACATTTCCATTTCTCCTTTTAA
LOC_Os01g70100
Os.22715.1.S1_at--87--9751Chr01:40893727..40893751 (25 bp)
TAATTTTCTGTTCCTCCTTATTGTC
LOC_Os01g70100
Os.22715.1.S1_at--187--10231Chr01:40893709..40893733 (25 bp)
TATTGTCCCTTGTATTTCCTGTATC
LOC_Os01g70100
Os.22715.1.S1_at--809--6151Chr01:40893657..40893681 (25 bp)
GAGGTATCCAGATTAGTTCAGTTCT
LOC_Os01g70100
Os.22715.1.S1_at--1015--7911Chr01:40893594..40893618 (25 bp)
GGATTGTTTTACTTGGCTTTGATGA
LOC_Os01g70100
Target Sequence 
CTCGCAATCGGAGGCCTGGATGATCAAGGATCCTCAGTGATGAACCCAGGGCGNACAAGCTGGGGAGTTGAGGCAGGTCG
ATGATGACAATGTCTANTTGNCCATGTATGCAGTTATAGTGGAAGACTCAGGGATTTTTAGTGCCGGCTTGTTGCTAATT
TGGTGTTTGGGTTGAGATTTGAGGTCACTGATGTTCTTAGGCCTATGACCTTGGCTGGTTGATTTCACATTTCCATTTCT
CCTTTTAATTTTCTGTTCCTCCTTATTGTCCCTTGTATTTCCTGTATCAGTGGTTTGAAGCAGTTGGTTGGTTGTGTGAG
GTATCCAGATTAGTTCAGTTCTAATTGTGTATGTATATAGCTNGAGCACTGAACTTAAANGGGATTGTTTTACTTGGCTT
TGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22715.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis