Browse Element(s) Details


Os.18832.1.S1_at

Description gb:AK068577.1
DB_XREF= gi:32978594
TID=Os.18832.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18832 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013157I04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013157I04, full insert sequence.
FL= gb:AK068577.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1925011/11LOC495115 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19230OsAffx.19542.3.S1_x_at2/1111+10970026..10975183retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g19240OsAffx.31056.1.S1_at11/1111+10976625..10978317amino acid transporter family protein, putative
LOC_Os11g19240OsAffx.31056.1.S1_x_at11/1111+10976625..10978317amino acid transporter family protein, putative
LOC_Os11g19250Os.18832.1.S1_at11/1111+10990647..11000910LOC495115 protein, putative, expressed
LOC_Os11g19260OsAffx.18940.1.S1_at11/1111+11002451..11002794hypothetical protein
LOC_Os11g19270NANA11+11024164..11024476hypothetical protein
LOC_Os11g19280OsAffx.18941.1.S1_at10/1111+11025612..11026525hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18832.1.S1_at--24--2511Chr11:11000289..11000313 (25 bp)
AACATGGTCGACGTGGCCGAATCAA
LOC_Os11g19250
Os.18832.1.S1_at--459--5991Chr11:11000315..11000335 (21 bp)
GAGACTGTTGGCACTCATGGTGCTA
LOC_Os11g19250
Os.18832.1.S1_at--442--231Chr11:11000422..11000446 (25 bp)
ATATTCAATAGCAGCGTCCAGCAGC
LOC_Os11g19250
Os.18832.1.S1_at--51--6491Chr11:11000449..11000473 (25 bp)
GATACCGTGTGCATGAGCCTTTACA
LOC_Os11g19250
Os.18832.1.S1_at--941--10471Chr11:11000469..11000493 (25 bp)
TTACAAACGCGCTTACCCCAAATGG
LOC_Os11g19250
Os.18832.1.S1_at--938--8431Chr11:11000492..11000516 (25 bp)
GGCCAGAACAGCTCTACCAGATATG
LOC_Os11g19250
Os.18832.1.S1_at--1020--10111Chr11:11000536..11000560 (25 bp)
TATGTGCTTGCACGTTGGCATGTAC
LOC_Os11g19250
Os.18832.1.S1_at--727--6591Chr11:11000578..11000602 (25 bp)
GATTGAGCTCATCGATGTGCTTCCT
LOC_Os11g19250
Os.18832.1.S1_at--163--7331Chr11:11000594..11000618 (25 bp)
GTGCTTCCTGATGCAGCTCATATAT
LOC_Os11g19250
Os.18832.1.S1_at--1117--171Chr11:11000724..11000748 (25 bp)
ATTTTTGCTGATTTTCGGCGTGCTT
LOC_Os11g19250
Os.18832.1.S1_at--908--9071Chr11:11000744..11000768 (25 bp)
TGCTTTCATCCGCATTTGTGATTGA
LOC_Os11g19250
Target Sequence 
AACATGGTCGACGTGGCCGAATCAAGGAGACTGTTGGCACTCATGGTGCTATGAAATGCATATTCAATAGCAGCGTCCAG
CAGCATGATACCGTGTGCATGAGCCTTTACAAACGCGCTTACCCCAAATGGCCAGAACAGCTCTACCAGATATGATCATA
TNAGGGTCATGGATATGTGCTTGCACGTTGGCATGTACGTCTCAAAGTTTTGACAGATTGAGCTCATCGATGTGCTTCCT
GATGCAGCTCATATATGTATACTAGTGCTAGCAGAAAAAGAAACCTCATGTCAACAACGACATGTAGTTAGCTGTATTCT
GTATGTTAACATTTGTTTTACGTTAACAGCTATGATTTTTGATTTTTGCTGATTTTCGGCGTGCTTTCATCCGCATTTGT
GATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18832.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis