Browse Element(s) Details


OsAffx.18940.1.S1_at

Description tigr:9639.m01794
TID=OsAffx.18940.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1926011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19240OsAffx.31056.1.S1_at11/1111+10976625..10978317amino acid transporter family protein, putative
LOC_Os11g19240OsAffx.31056.1.S1_x_at11/1111+10976625..10978317amino acid transporter family protein, putative
LOC_Os11g19250Os.18832.1.S1_at11/1111+10990647..11000910LOC495115 protein, putative, expressed
LOC_Os11g19260OsAffx.18940.1.S1_at11/1111+11002451..11002794hypothetical protein
LOC_Os11g19270NANA11+11024164..11024476hypothetical protein
LOC_Os11g19280OsAffx.18941.1.S1_at10/1111+11025612..11026525hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18940.1.S1_at--800--9011Chr11:11002490..11002514 (25 bp)
TGCAACAAGGTTGACCTCGTCCGGA
LOC_Os11g19260
OsAffx.18940.1.S1_at--987--2171Chr11:11002494..11002518 (25 bp)
ACAAGGTTGACCTCGTCCGGATGGG
LOC_Os11g19260
OsAffx.18940.1.S1_at--1004--4231Chr11:11002510..11002534 (25 bp)
CCGGATGGGGACTCGCCTCAAGGTC
LOC_Os11g19260
OsAffx.18940.1.S1_at--535--9491Chr11:11002566..11002590 (25 bp)
TCTCCAAGCTCATCCGTGCGATACG
LOC_Os11g19260
OsAffx.18940.1.S1_at--356--2691Chr11:11002571..11002595 (25 bp)
AAGCTCATCCGTGCGATACGAATTC
LOC_Os11g19260
OsAffx.18940.1.S1_at--605--551Chr11:11002577..11002599 (23 bp)
ATCCGTGCGATACGAATTCCTGGCA
LOC_Os11g19260
OsAffx.18940.1.S1_at--351--9151Chr11:11002582..11002707 (25 bp)
TGCGATACGAATTCCTGGCACTATG
LOC_Os11g19260
OsAffx.18940.1.S1_at--1036--5191Chr11:11002590..11002715 (25 bp)
GAATTCCTGGCACTATGGACTTGCA
LOC_Os11g19260
OsAffx.18940.1.S1_at--45--8891Chr11:11002724..11002748 (25 bp)
TGAGGAAGATGTTACGCAAGCGGTT
LOC_Os11g19260
OsAffx.18940.1.S1_at--222--9951Chr11:11002736..11002760 (25 bp)
TACGCAAGCGGTTAGAGTTTGTATC
LOC_Os11g19260
OsAffx.18940.1.S1_at--1026--3231Chr11:11002740..11002764 (25 bp)
CAAGCGGTTAGAGTTTGTATCGAAT
LOC_Os11g19260
Target Sequence 
TGCAACAAGGTTGACCTCGTCCGGATGGGGACTCGCCTCAAGGTCCACAAGCCACCTCCCGTCACCGATGGCCTCGTCTC
CAAGCTCATCCGTGCGATACGAATTCCTGGCACTATGGACTTGCATCCACACATGAGGAAGATGTTACGCAAGCGGTTAG
AGTTTGTATCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis