Browse Element(s) Details


OsAffx.18941.1.S1_at

Description tigr:9639.m01796
TID=OsAffx.18941.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1928010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19250Os.18832.1.S1_at11/1111+10990647..11000910LOC495115 protein, putative, expressed
LOC_Os11g19260OsAffx.18940.1.S1_at11/1111+11002451..11002794hypothetical protein
LOC_Os11g19270NANA11+11024164..11024476hypothetical protein
LOC_Os11g19280OsAffx.18941.1.S1_at10/1111+11025612..11026525hypothetical protein
LOC_Os11g19290OsAffx.18942.1.S1_at11/1111+11028408..11029781lipase class 3 family protein, putative
LOC_Os11g19300OsAffx.31058.1.S1_at11/1111+11035853..11042438hypothetical protein
LOC_Os11g19300Os.25330.2.S1_at1/1111+11035853..11042438hypothetical protein
LOC_Os11g19310OsAffx.22421.3.S1_at1/1111+11045593..11048641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19310OsAffx.22421.2.S1_at1/1111+11045593..11048641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19320NANA11+11049201..11049581hypothetical protein
LOC_Os11g19330Os.27435.1.S1_x_at3/1111+11051382..11054651transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19330Os.46334.1.S1_x_at2/1111+11051382..11054651transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19330Os.46334.1.S1_at1/1111+11051382..11054651transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19330Os.51856.1.S2_x_at1/1111+11051382..11054651transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19330Os.46985.1.S1_x_at1/1111+11051382..11054651transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19330Os.51856.1.S2_at1/1111+11051382..11054651transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18941.1.S1_at--58--7591Chr11:11025642..11025666 (25 bp)
TTTAAGGGTAGGAGCAAAACCTGCT
LOC_Os11g19280
OsAffx.18941.1.S1_at--1062--3271Chr11:11025656..11025680 (25 bp)
CAAAACCTGCTGTGTGGTGCACTTG
LOC_Os11g19280
OsAffx.18941.1.S1_at--660--8035Chr11:11025688..11025712 (25 bp)
GGAGTTATGTGAAGGGTCCTGTCAT
LOC_Os11g19280
OsAffx.18941.1.S1_at--155--2891Chr11:11025699..11025723 (25 bp)
AAGGGTCCTGTCATAGATCCTTTCC
LOC_Os11g19280
OsAffx.18941.1.S1_at--510--8731NONE
TGTCATAGATCCTTTCCGTTCCCCG
NONE
OsAffx.18941.1.S1_at--463--9271Chr11:11026385..11026409 (25 bp)
TCCCCGCCAAAGCAAGATACCGATG
LOC_Os11g19280
OsAffx.18941.1.S1_at--677--6451Chr11:11026400..11026424 (25 bp)
GATACCGATGAGAAACTACTATTGG
LOC_Os11g19280
OsAffx.18941.1.S1_at--332--3691Chr11:11026418..11026442 (25 bp)
CTATTGGAGAAGGAGTCGGCAGACA
LOC_Os11g19280
OsAffx.18941.1.S1_at--577--1131Chr11:11026431..11026455 (25 bp)
AGTCGGCAGACAACGAGGACGAGAA
LOC_Os11g19280
OsAffx.18941.1.S1_at--654--1471Chr11:11026452..11026476 (25 bp)
AGAATGCCATTGAGGATGGCAACGA
LOC_Os11g19280
OsAffx.18941.1.S1_at--1013--5151Chr11:11026470..11026494 (25 bp)
GCAACGACGATGACCGTTTAAGCTG
LOC_Os11g19280
Target Sequence 
TTTAAGGGTAGGAGCAAAACCTGCTGTGTGGTGCACTTGTTTGGGGGGAGTTATGTGAAGGGTCCTGTCATAGATCCTTT
CCGTTCCCCGCCAAAGCAAGATACCGATGAGAAACTACTATTGGAGAAGGAGTCGGCAGACAACGAGGACGAGAATGCCA
TTGAGGATGGCAACGACGATGACCGTTTAAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18941.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis