Browse Element(s) Details


OsAffx.18942.1.S1_at

Description tigr:9639.m01797
TID=OsAffx.18942.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lipase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1929011/11lipase class 3 family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19270NANA11+11024164..11024476hypothetical protein
LOC_Os11g19280OsAffx.18941.1.S1_at10/1111+11025612..11026525hypothetical protein
LOC_Os11g19290OsAffx.18942.1.S1_at11/1111+11028408..11029781lipase class 3 family protein, putative
LOC_Os11g19300OsAffx.31058.1.S1_at11/1111+11035853..11042438hypothetical protein
LOC_Os11g19300Os.25330.2.S1_at1/1111+11035853..11042438hypothetical protein
LOC_Os11g19310OsAffx.22421.3.S1_at1/1111+11045593..11048641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19310OsAffx.22421.2.S1_at1/1111+11045593..11048641transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19320NANA11+11049201..11049581hypothetical protein
LOC_Os11g19330Os.27435.1.S1_x_at3/1111+11051382..11054651transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19330Os.46334.1.S1_x_at2/1111+11051382..11054651transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19330Os.46334.1.S1_at1/1111+11051382..11054651transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19330Os.51856.1.S2_x_at1/1111+11051382..11054651transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19330Os.46985.1.S1_x_at1/1111+11051382..11054651transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g19330Os.51856.1.S2_at1/1111+11051382..11054651transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18942.1.S1_at--134--5171Chr11:11028973..11028997 (25 bp)
GCAAGTTCACCTGCGGGAGCTGCCG
LOC_Os11g19290
OsAffx.18942.1.S1_at--619--1751Chr11:11028736..11028760 (25 bp)
ACCTCGAGTTCAAGAGACGGTGCGA
LOC_Os11g19290
OsAffx.18942.1.S1_at--630--10511Chr11:11028728..11028752 (25 bp)
TTCAAGAGACGGTGCGATGAGCTCC
LOC_Os11g19290
OsAffx.18942.1.S1_at--899--7971Chr11:11028658..11028682 (25 bp)
GGATGCCCGGCGTGGTGCTCAACGA
LOC_Os11g19290
OsAffx.18942.1.S1_at--1105--4111Chr11:11028627..11028651 (25 bp)
CGCTAGGGTTTTCCGGGTCGAGCTG
LOC_Os11g19290
OsAffx.18942.1.S1_at--169--8071Chr11:11028598..11028622 (25 bp)
GGAGCAAGGCGTGCTACACCCACGT
LOC_Os11g19290
OsAffx.18942.1.S1_at--516--9451Chr11:11028574..11028598 (25 bp)
TCGGCGTCGAAGTCGCCCTCGATTT
LOC_Os11g19290
OsAffx.18942.1.S1_at--680--5331Chr11:11028566..11028590 (25 bp)
GAAGTCGCCCTCGATTTCTTCAAGG
LOC_Os11g19290
OsAffx.18942.1.S1_at--1039--9331Chr11:11028562..11028586 (25 bp)
TCGCCCTCGATTTCTTCAAGGCCAG
LOC_Os11g19290
OsAffx.18942.1.S1_at--890--5791Chr11:11028518..11028542 (25 bp)
GACCTCGACGCCTACATAAATCACC
LOC_Os11g19290
OsAffx.18942.1.S1_at--186--4091Chr11:11028457..11028481 (25 bp)
CGACCTTGGAGTCGTGGAGGTGGCA
LOC_Os11g19290
Target Sequence 
GCAAGTTCACCTGCGGGAGCTGCCGGAACCAGCTCCTCTCCGAGGTGACCCGCCTCATCGACAAGTACAAGCACGACGAC
GTCAGCATCACCCTCGCCGGACACAGCATGGGGAGCTCGCTGGCGATCCTCCTCGGCTACGACCTCGCCGAGCTGGGCCT
CAACCGCGGCGGCCGCGGCGGCCGCGGCGGCGCCATCCCGATCACCGTCTTCTCCTTCGGCGGCCCGCGCGTCGGCAACC
TCGAGTTCAAGAGACGGTGCGATGAGCTCCGCGTCAAGGTGCTCCGCGTCGCGAACGCCCGCGACCCGGTGACGAGGATG
CCCGGCGTGGTGCTCAACGAGGCCGCCGCTAGGGTTTTCCGGGTCGAGCTGCCGTGGAGCAAGGCGTGCTACACCCACGT
CGGCGTCGAAGTCGCCCTCGATTTCTTCAAGGCCAGCCACGCGGCGTGCGTCCACGACCTCGACGCCTACATAAATCACC
TCCTCGACGGCGGCGCGGCGGCGTCGGCGACGACGACGACCTTGGAGTCGTGGAGGTGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18942.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis