Browse Element(s) Details


Os.18840.1.S1_at

Description gb:AK069618.1
DB_XREF= gi:32979642
TID=Os.18840.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18840 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023025H16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025H16, full insert sequence.
FL= gb:AK069618.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0588011/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05820Os.51287.1.S1_at11/117+2795991..2799663expressed protein
LOC_Os07g05820Os.7873.1.S1_at11/117+2795991..2799663expressed protein
LOC_Os07g05820Os.7873.1.S1_x_at11/117+2795991..2799663expressed protein
LOC_Os07g05830OsAffx.5224.1.S1_at9/117+2800228..2802509ZIM motif family protein, expressed
LOC_Os07g05840OsAffx.28294.2.S1_x_at11/117+2805240..2808129expressed protein
LOC_Os07g05840OsAffx.28294.2.S1_at11/117+2805240..2808129expressed protein
LOC_Os07g05840Os.10038.1.S1_s_at11/117+2805240..2808129expressed protein
LOC_Os07g05840OsAffx.28294.3.S1_x_at8/117+2805240..2808129expressed protein
LOC_Os07g05850NANA7+2808505..2812192transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05860OsAffx.16109.1.S1_at11/117+2812436..2813389hypothetical protein
LOC_Os07g05870Os.57565.1.S1_at7/117+2817437..2821212expressed protein
LOC_Os07g05880Os.18840.1.S1_at11/117+2822624..2824937Kelch motif family protein, expressed
LOC_Os07g05890NANA7+2827967..2828317hypothetical protein
LOC_Os07g05900OsAffx.28295.1.S1_x_at11/117+2837776..2838279hypothetical protein
LOC_Os07g05910OsAffx.28296.1.S1_at10/117+2846747..2847231hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18840.1.S1_at--635--5531Chr07:2823158..2823182 (25 bp)
GAAACGGACTCATGGGACTCTGTAA
LOC_Os07g05880
Os.18840.1.S1_at--452--7491Chr07:2823145..2823169 (25 bp)
GGGACTCTGTAAAAGGCCCTCCTAT
LOC_Os07g05880
Os.18840.1.S1_at--747--1251Chr07:2823073..2823097 (25 bp)
AGATTGTTGTTGTTGGCCGAGGCCT
LOC_Os07g05880
Os.18840.1.S1_at--2--6231Chr07:2823055..2823079 (25 bp)
GAGGCCTCCATGTAGCTATTGGCCA
LOC_Os07g05880
Os.18840.1.S1_at--349--2631Chr07:2823019..2823043 (25 bp)
AACCTGGCAGCCATCCTGATAGTAG
LOC_Os07g05880
Os.18840.1.S1_at--1--9551Chr07:2822861..2822885 (25 bp)
TCTTTCATTTTATTTGGCCAACTGG
LOC_Os07g05880
Os.18840.1.S1_at--1011--7671Chr07:2822838..2822862 (25 bp)
GGGTAAAGCCCTATTCTGAGCTGTA
LOC_Os07g05880
Os.18840.1.S1_at--996--4731Chr07:2822819..2822843 (25 bp)
GCTGTAAAATTGTTCTCCTCTGTAT
LOC_Os07g05880
Os.18840.1.S1_at--1004--6911Chr07:2822798..2822822 (25 bp)
GTATGTTAGTCTCTTTCCCAGTTAA
LOC_Os07g05880
Os.18840.1.S1_at--62--1211Chr07:2822707..2822731 (25 bp)
AGTTTGCCGGTACTTGAGACAATTT
LOC_Os07g05880
Os.18840.1.S1_at--117--10271Chr07:2822658..2822682 (25 bp)
TTTGACTTCTTGTTCAGTGCACTGC
LOC_Os07g05880
Target Sequence 
GAAACGGACTCATGGGACTCTGTAAAAGGCCCTCCTATGCCTGAACGAATTATGAAGCCATTTTCGGTGAGTTGTTTGGA
GAATAAGATTGTTGTTGTTGGCCGAGGCCTCCATGTAGCTATTGGCCATGTCAAGAAGCAACCTGGCAGCCATCCTGATA
GTAGGAGCTCAAGCTACTTAATTCAGTGGCAAGATGTGGATGTTCCTAGGGAATTTGGTGATCTGACACCTTCAAACAGT
CAGATTTTGTATGCTTAACTGCTGAAAATGCCGGATCTGCAGAGAGGCCATTGTTGTTCTTTCATTTTATTTGGCCAACT
GGGTAAAGCCCTATTCTGAGCTGTAAAATTGTTCTCCTCTGTATGTTAGTCTCTTTCCCAGTTAATTTTACAGCCTGTAA
GTGTTATGTCAGTAAATAAATAAAAAAATTCAAGAGATTGTTGTAAGTAGAAGTTTGCCGGTACTTGAGACAATTTGTTG
TATTTGCTCTTTAAACTGATTTTGACTTCTTGTTCAGTGCACTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18840.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis