Browse Element(s) Details


Os.18877.1.S1_at

Description gb:AK060336.1
DB_XREF= gi:32970354
TID=Os.18877.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18877 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013124F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-008-C05, full insert sequence.
FL= gb:AK060336.1 gb:AK099027.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3418011/11Isopentenyl-diphosphate delta-isomerase II, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g34150Os.57507.1.S1_x_at10/115+20109210..20110617Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os05g34160Os.50748.1.S1_at10/115+20113860..20115430mTERF family protein, expressed
LOC_Os05g34170Os.45929.1.S1_at11/115+20120976..20124254Tubulin beta-6 chain, putative, expressed
LOC_Os05g34180Os.18877.1.S1_at11/115+20127170..20130433Isopentenyl-diphosphate delta-isomerase II, putative, expressed
LOC_Os05g34190Os.40855.4.S1_x_at1/115+20133326..20136837hypothetical protein
LOC_Os05g34200NANA5+20142458..20147582hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008299biological_processisoprenoid biosynthesis
GO:0015995biological_processchlorophyll biosynthesis
GO:0004452molecular_functionisopentenyl-diphosphate delta-isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18877.1.S1_at--465--3411Chr05:20129727..20129751 (25 bp)
CAGCACAGCGGAAGCTATTCGATGA
LOC_Os05g34180
Os.18877.1.S1_at--457--2751Chr05:20129769..20129793 (25 bp)
AAGAACTACCTGTTGACCAATTCAT
LOC_Os05g34180
Os.18877.1.S1_at--269--5851Chr05:20129783..20129807 (25 bp)
GACCAATTCATTCCTCTTGGGAGGA
LOC_Os05g34180
Os.18877.1.S1_at--961--8371Chr05:20129840..20130001 (25 bp)
GGCGAACATGAACTGGACTACCTCC
LOC_Os05g34180
Os.18877.1.S1_at--170--2031Chr05:20129993..20130017 (25 bp)
ACTACCTCCTATTCATGGTTCGTGA
LOC_Os05g34180
Os.18877.1.S1_at--61--8091Chr05:20130021..20130045 (25 bp)
GGAGCTCAGCCCGAATCCTGAAGAA
LOC_Os05g34180
Os.18877.1.S1_at--795--7351Chr05:20130110..20130134 (25 bp)
GTGAAGGCGGCATTAAGCTGTCCCC
LOC_Os05g34180
Os.18877.1.S1_at--1024--2671Chr05:20130124..20130148 (25 bp)
AAGCTGTCCCCTTGGTTTAGGCTGG
LOC_Os05g34180
Os.18877.1.S1_at--127--5211Chr05:20130277..20130301 (25 bp)
GAATTGTTGCTTTAACCTTTTCACG
LOC_Os05g34180
Os.18877.1.S1_at--129--2431Chr05:20130357..20130381 (25 bp)
AAAACTTACCGGAATCATGCTCTGC
LOC_Os05g34180
Os.18877.1.S1_at--268--5251Chr05:20130368..20130392 (25 bp)
GAATCATGCTCTGCCAGGAGCTTAT
LOC_Os05g34180
Target Sequence 
CAGCACAGCGGAAGCTATTCGATGAACTGGGAATACAAGCTGAAGAACTACCTGTTGACCAATTCATTCCTCTTGGGAGG
ATGCTTTACNAAGGCTCCATCTGATGGAAAATGGGGCGAACATGAACTGGACTACCTCCTATTCATGGTTCGTGATGTGG
AGCTCAGCCCGAATCCTGAAGAAGTGGCCGACGTCAAGTACGTGAATCGTGATGAGCTGAAGGAGTTGCTCAAGAAGGCA
GATGCTGGTGAAGGCGGCATTAAGCTGTCCCCTTGGTTTAGGCTGGTTGTTGACAACTTCCTCATGAGATGGTGGGATCA
TGTTGAGCAAGGGACTCTGGAGGAGGCCATCGACATGAAAACAATTCATAAGTTGTAGAGTATAAATCGTTGGGCAACGT
CCTTAGAAAATAAAGAATTGTTGCTTTAACCTTTTCACGGAAATAATCCAGAAAGAAATACATGTTCTTATGCAGGTTTT
ATGAGGTAGAAGCAAAAACTTACCGGAATCATGCTCTGCCAGGAGCTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18877.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis