Browse Element(s) Details


Os.18929.1.S1_s_at

Description gb:BM419155
DB_XREF= gi:18385956
DB_XREF=R010A09
CLONE=R010A09
TID=Os.18929.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.18929 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3858011/11Leucine Rich Repeat family protein, expressed
LOC_Os11g370501/11Leucine Rich Repeat family protein, expressed
LOC_Os11g385201/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38540NANA11+22330758..22336895retrotransposon protein, putative, unclassified
LOC_Os11g38550Os.47463.1.S1_x_at5/1111+22341181..22343088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38550Os.14491.2.S1_x_at3/1111+22341181..22343088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38560NANA11+22344701..22345897transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38570NANA11+22350582..22350948NA
LOC_Os11g38580Os.18929.1.S1_s_at11/1111+22361124..22365945Leucine Rich Repeat family protein, expressed
LOC_Os11g38580Os.18814.1.S1_at11/1111+22361124..22365945Leucine Rich Repeat family protein, expressed
LOC_Os11g38580OsAffx.31368.1.S1_x_at10/1111+22361124..22365945Leucine Rich Repeat family protein, expressed
LOC_Os11g38580OsAffx.31368.1.S1_at8/1111+22361124..22365945Leucine Rich Repeat family protein, expressed
LOC_Os11g38590OsAffx.31372.1.S1_at11/1111+22368315..22368875hypothetical protein
LOC_Os11g38600NANA11+22370840..22371268Kinetochore protein, putative
LOC_Os11g38610Os.39008.1.S1_at9/1111+22375080..22383119expressed protein
LOC_Os11g38620OsAffx.19234.1.S1_at10/1111+22386079..22393195hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18929.1.S1_s_at--655--2491Chr11:22362982..22363006 (25 bp)
AACATGCAGGTGTTCCGGACCAAAA
LOC_Os11g38580
Os.18929.1.S1_s_at--287--3951Chr11:22362997..22363021 (25 bp)
CGGACCAAAATGGAGAGGCTTGTTT
LOC_Os11g38580
Os.18929.1.S1_s_at--676--9713Chr11:22363051..22363075 (25 bp)
TCAAGCAGGAACTTAAAGAGCAGCT
LOC_Os11g38580
Os.18929.1.S1_s_at--97--1371Chr11:22363067..22363091 (25 bp)
AGAGCAGCTGAAGATCAAAGGGATC
LOC_Os11g38580
Os.18929.1.S1_s_at--579--6751Chr11:22363181..22363205 (25 bp)
GTTCAGAAGGGCTTTGAGCCTATTA
LOC_Os11g38580
Os.18929.1.S1_s_at--778--5431Chr11:22363281..22363305 (25 bp)
GAACCTATAGATCACTGTTCTCATG
LOC_Os11g38580
Os.18929.1.S1_s_at--460--391Chr11:22363291..22363315 (25 bp)
ATCACTGTTCTCATGTTGGTCTCTA
LOC_Os11g38580
Os.18929.1.S1_s_at--150--1971Chr11:22363294..22363318 (25 bp)
ACTGTTCTCATGTTGGTCTCTACCA
LOC_Os11g38580
Os.18929.1.S1_s_at--1082--10851Chr11:22363306..22363330 (25 bp)
TTGGTCTCTACCATCATACAGTGCT
LOC_Os11g38580
Os.18929.1.S1_s_at--36--9551Chr11:22363312..22363336 (25 bp)
TCTACCATCATACAGTGCTCGAACT
LOC_Os11g38580
Os.18929.1.S1_s_at--924--7311Chr11:22363326..22363350 (25 bp)
GTGCTCGAACTTACTAGCAAGCAGA
LOC_Os11g38580
Target Sequence 
AACATGCAGGTGTTCCGGACCAAAATGGAGAGGCTTGTTTTGAAGAATTAGAGCTGAAGATCGAAGAAATCAAGCAGGAA
CTTAAAGAGCAGCTGAAGATCAAAGGGATCGTGGACAAGATCAAACATCACTTACAGGGTGAGTGCCCCCTCATTATCCT
AAAAGTTGATGACATGATGGATGGATCCAGATGGGAGGAGTTCAGAAGGGCTTTGAGCCTATTAGAATGCAGTGCCGATG
CACTGATCTTCACCACAGAGAGCACCGAACAGGTAAAGGATATTGCTATCCACCGCGAGAACCTATAGATCACTGTTCTC
ATGTTGGTCTCTACCATCATACAGTGCTCGAACTTACTAGCAAGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18929.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis