Browse Element(s) Details


OsAffx.31372.1.S1_at

Description tigr:9639.m03506
TID=OsAffx.31372.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3859011/11hypothetical protein
LOC_Os11g384502/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38560NANA11+22344701..22345897transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38570NANA11+22350582..22350948NA
LOC_Os11g38580Os.18929.1.S1_s_at11/1111+22361124..22365945Leucine Rich Repeat family protein, expressed
LOC_Os11g38580Os.18814.1.S1_at11/1111+22361124..22365945Leucine Rich Repeat family protein, expressed
LOC_Os11g38580OsAffx.31368.1.S1_x_at10/1111+22361124..22365945Leucine Rich Repeat family protein, expressed
LOC_Os11g38580OsAffx.31368.1.S1_at8/1111+22361124..22365945Leucine Rich Repeat family protein, expressed
LOC_Os11g38590OsAffx.31372.1.S1_at11/1111+22368315..22368875hypothetical protein
LOC_Os11g38600NANA11+22370840..22371268Kinetochore protein, putative
LOC_Os11g38610Os.39008.1.S1_at9/1111+22375080..22383119expressed protein
LOC_Os11g38620OsAffx.19234.1.S1_at10/1111+22386079..22393195hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31372.1.S1_at--969--3751Chr11:22368806..22368830 (25 bp)
CTCTGCTTCAAGTTGCCATGGCCTT
LOC_Os11g38590
OsAffx.31372.1.S1_at--416--9731Chr11:22368799..22368823 (25 bp)
TCAAGTTGCCATGGCCTTGCGGCGA
LOC_Os11g38590
OsAffx.31372.1.S1_at--1091--8311Chr11:22368760..22368784 (25 bp)
GGCTCTTCAAGTCCATCAGCACATT
LOC_Os11g38590
OsAffx.31372.1.S1_at--57--1151Chr11:22368751..22368775 (25 bp)
AGTCCATCAGCACATTGGCGCAGGG
LOC_Os11g38590
OsAffx.31372.1.S1_at--921--5691Chr11:22368486..22368506 (21 bp)
GACGACCGGTGGCTCTCCGAGATTT
LOC_Os11g38590
OsAffx.31372.1.S1_at--189--8331Chr11:22368415..22368496 (25 bp)
GGCTCTCCGAGATTTTTGTGATGAC
LOC_Os11g38590
OsAffx.31372.1.S1_at--50--694Chr11:22320940..22320959 (20 bp)
ATGACTGATGAGGATTTGGGCGTTA
NONE
OsAffx.31372.1.S1_at--997--7931Chr11:22368384..22368408 (25 bp)
GGATTTGGGCGTTAGCTTAGAACTA
LOC_Os11g38590
OsAffx.31372.1.S1_at--1107--4871Chr11:22368370..22368394 (25 bp)
GCTTAGAACTAGAAGGGTGCCCTCG
LOC_Os11g38590
OsAffx.31372.1.S1_at--338--7792Chr11:22368355..22368379 (25 bp)
GGTGCCCTCGCAATGACCGATTTAG
LOC_Os11g38590
OsAffx.31372.1.S1_at--937--3172Chr11:22368345..22368369 (25 bp)
CAATGACCGATTTAGTCAGCTTGGT
LOC_Os11g38590
Target Sequence 
CTCTGCTTCAAGTTGCCATGGCCTTGCGGCGACCTCGAGCTTCCCTGGCTCTTCAAGTCCATCAGCACATTGGCGCAGGG
CCGCCTCGTCGCCGGGGACCTCCCCTCCCCCTCGTCGGACGGAGGAGGCGGCGGTGGGGGTGAGGAAGAGGAGCCCCGGA
TTGGCGGCGGAGGCGGAGCAGCGGGCGCCGGCGAGCGGGAGGGACGCGGCCGTGCTGGAGTTCTACTCCCCGCGGCTCCG
CCTGTGCGCGTCGCTGCAGGGGCTCGTGCGCGAGCTCGAGGGCGGCGCCGGCGGGTGGACCGCTTCGCGATCGCCGACGC
CGAGGACGACCGGTGGCTCTCCGAGATTTTTGTGATGACTGATGAGGATTTGGGCGTTAGCTTAGAACTAGAAGGGTGCC
CTCGCAATGACCGATTTAGTCAGCTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31372.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis