Browse Element(s) Details


OsAffx.31368.1.S1_at

Description tigr:9639.m03505
TID=OsAffx.31368.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g385808/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38540NANA11+22330758..22336895retrotransposon protein, putative, unclassified
LOC_Os11g38550Os.47463.1.S1_x_at5/1111+22341181..22343088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38550Os.14491.2.S1_x_at3/1111+22341181..22343088transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38560NANA11+22344701..22345897transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38570NANA11+22350582..22350948NA
LOC_Os11g38580Os.18929.1.S1_s_at11/1111+22361124..22365945Leucine Rich Repeat family protein, expressed
LOC_Os11g38580Os.18814.1.S1_at11/1111+22361124..22365945Leucine Rich Repeat family protein, expressed
LOC_Os11g38580OsAffx.31368.1.S1_x_at10/1111+22361124..22365945Leucine Rich Repeat family protein, expressed
LOC_Os11g38580OsAffx.31368.1.S1_at8/1111+22361124..22365945Leucine Rich Repeat family protein, expressed
LOC_Os11g38590OsAffx.31372.1.S1_at11/1111+22368315..22368875hypothetical protein
LOC_Os11g38600NANA11+22370840..22371268Kinetochore protein, putative
LOC_Os11g38610Os.39008.1.S1_at9/1111+22375080..22383119expressed protein
LOC_Os11g38620OsAffx.19234.1.S1_at10/1111+22386079..22393195hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31368.1.S1_at--781--4271NONE
CCTGTCCCGAATGAGTATACAGTTT
NONE
OsAffx.31368.1.S1_at--306--7251NONE
GTCCCGAATGAGTATACAGTTTTCT
NONE
OsAffx.31368.1.S1_at--711--4091NONE
CGAATGAGTATACAGTTTTCTTATT
NONE
OsAffx.31368.1.S1_at--331--2732Chr11:22365847..22365871 (25 bp)
AAGCAAATATTATGCAGCATGCTTG
LOC_Os11g38580
OsAffx.31368.1.S1_at--910--1532Chr11:22365862..22365886 (25 bp)
AGCATGCTTGACTGGATTCTGAAAC
LOC_Os11g38580
OsAffx.31368.1.S1_at--360--4992Chr11:22365863..22365887 (25 bp)
GCATGCTTGACTGGATTCTGAAACT
LOC_Os11g38580
OsAffx.31368.1.S1_at--1083--3512Chr11:22365864..22365888 (25 bp)
CATGCTTGACTGGATTCTGAAACTC
LOC_Os11g38580
OsAffx.31368.1.S1_at--457--9072Chr11:22365866..22365890 (25 bp)
TGCTTGACTGGATTCTGAAACTCAA
LOC_Os11g38580
OsAffx.31368.1.S1_at--4--10611Chr11:22365878..22365902 (25 bp)
TTCTGAAACTCAACGATGAACTTGG
LOC_Os11g38580
OsAffx.31368.1.S1_at--542--5411Chr11:22365882..22365906 (25 bp)
GAAACTCAACGATGAACTTGGTAAA
LOC_Os11g38580
OsAffx.31368.1.S1_at--355--3751Chr11:22365886..22365910 (25 bp)
CTCAACGATGAACTTGGTAAATGGG
LOC_Os11g38580
Target Sequence 
CCTGTCCCGAATGAGTATACAGTTTTCTTATTCCTGAAAAAGCAAATATTATGCAGCATGCTTGACTGGATTCTGAAACT
CAACGATGAACTTGGTAAATGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31368.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis