Browse Element(s) Details


Os.39008.1.S1_at

Description gb:AK101994.1
DB_XREF= gi:32987203
TID=Os.39008.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.39008 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033079I07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033079I07, full insert sequence.
FL= gb:AK101994.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g386109/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38570NANA11+22350582..22350948NA
LOC_Os11g38580Os.18929.1.S1_s_at11/1111+22361124..22365945Leucine Rich Repeat family protein, expressed
LOC_Os11g38580Os.18814.1.S1_at11/1111+22361124..22365945Leucine Rich Repeat family protein, expressed
LOC_Os11g38580OsAffx.31368.1.S1_x_at10/1111+22361124..22365945Leucine Rich Repeat family protein, expressed
LOC_Os11g38580OsAffx.31368.1.S1_at8/1111+22361124..22365945Leucine Rich Repeat family protein, expressed
LOC_Os11g38590OsAffx.31372.1.S1_at11/1111+22368315..22368875hypothetical protein
LOC_Os11g38600NANA11+22370840..22371268Kinetochore protein, putative
LOC_Os11g38610Os.39008.1.S1_at9/1111+22375080..22383119expressed protein
LOC_Os11g38620OsAffx.19234.1.S1_at10/1111+22386079..22393195hypothetical protein
LOC_Os11g38630OsAffx.19235.1.S1_at11/1111+22399361..22406979hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39008.1.S1_at--513--3091Chr11:22382749..22382773 (25 bp)
AATACAGTCGTTCCAGTTTCTGTCC
LOC_Os11g38610
Os.39008.1.S1_at--1003--1611Chr11:22382791..22382815 (25 bp)
AGCGTATCGACCCAGTTTCAGAGGC
LOC_Os11g38610
Os.39008.1.S1_at--735--8371Chr11:22382813..22382837 (25 bp)
GGCCGCGGGCACAGAAGTCACAGTC
LOC_Os11g38610
Os.39008.1.S1_at--679--6231Chr11:22382889..22382913 (25 bp)
GATGGCTGAGTAATCACCTTTTTAG
LOC_Os11g38610
Os.39008.1.S1_at--769--5211Chr11:22382946..22382970 (25 bp)
GAATTTTCTGTCATGTACTGTCGAT
LOC_Os11g38610
Os.39008.1.S1_at--1065--8711Chr11:22382964..22382988 (25 bp)
TGTCGATATGGCTTTCGTCTCTATA
LOC_Os11g38610
Os.39008.1.S1_at--955--7151Chr11:22382980..22383004 (25 bp)
GTCTCTATATGCCTTGTCCTTAGCT
LOC_Os11g38610
Os.39008.1.S1_at--592--10451Chr11:22382999..22383023 (25 bp)
TTAGCTTTACAGTTCTACTACCAGA
LOC_Os11g38610
Os.39008.1.S1_at--819--1711Chr11:22383018..22383042 (25 bp)
ACCAGATATCATACGCAGCGCAGGG
LOC_Os11g38610
Os.39008.1.S1_at--911--1871Chr11:22383134..22383159 (25 bp)
ACGAGTGTGGCCTTGGACTGTTGCT
NONE
Os.39008.1.S1_at--650--6351Chr11:22383188..22383212 (25 bp)
GATCCTTCCCTGCAGCGAAAAGTTT
NONE
Target Sequence 
AATACAGTCGTTCCAGTTTCTGTCCACAGATAATNTTNTTCGAGCGTATCGACCCAGTTTCAGAGGCCGCGGGCACAGAA
GTCACAGTCTAGACAACTGCTTACAGTTNTACCTGGAAACCGAATCAGGGGGCTATTTTTGATGGCTGAGTAATCACCTT
TTTAGTTAGAATACAGACAGCTTGATGACGCAAAGCTGAATTTTCTGTCATGTACTGTCGATATGGCTTTCGTCTCTATA
TGCCTTGTCCTTAGCTTTACAGTTCTACTACCAGATATCATACGCAGCGCAGGGTAGTAAGTATTCCAGTTATGCNCTAC
TTTTAGGATGATATACCAGGTATNTTAATTACTTCGAAACAGCTTTTCTTGAGTCCAGTTCTTGCACGAGTGTGGCCTTG
GACTGTTGCTGTGATTGAGAATTGGTCCTTGATCAGTTGATCCTTCCCTGCAGCGAAAAGTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39008.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis