Browse Element(s) Details


OsAffx.19235.1.S1_at

Description tigr:9639.m03510
TID=OsAffx.19235.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3863011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38610Os.39008.1.S1_at9/1111+22375080..22383119expressed protein
LOC_Os11g38620OsAffx.19234.1.S1_at10/1111+22386079..22393195hypothetical protein
LOC_Os11g38630OsAffx.19235.1.S1_at11/1111+22399361..22406979hypothetical protein
LOC_Os11g38640OsAffx.7344.1.S1_at11/1111+22409356..22415812expressed protein
LOC_Os11g38650Os.11107.1.S1_at11/1111+22424828..22426712UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19235.1.S1_at--185--3651Chr11:22404096..22404120 (25 bp)
CTTCTGTGAAGTCCAGTCTCTGTAA
LOC_Os11g38630
OsAffx.19235.1.S1_at--1076--8211Chr11:22404899..22404923 (25 bp)
GGCAACAGTTTTTCAAGGGCTGCAT
LOC_Os11g38630
OsAffx.19235.1.S1_at--860--491Chr11:22404926..22404950 (25 bp)
ATCGGAAGCTTCTTTGCATTTTTGT
LOC_Os11g38630
OsAffx.19235.1.S1_at--626--7571Chr11:22404969..22405256 (25 bp)
GGGCGTGTAATCAATTCCTTTGCAG
LOC_Os11g38630
OsAffx.19235.1.S1_at--721--8871Chr11:22405330..22405354 (25 bp)
TGATGTTTCTCCGTTTAACACGCCG
LOC_Os11g38630
OsAffx.19235.1.S1_at--601--2151Chr11:22405347..22405371 (25 bp)
ACACGCCGCATTTCTTTACTATAGG
LOC_Os11g38630
OsAffx.19235.1.S1_at--200--1031Chr11:22405752..22405776 (25 bp)
AGGGTCGGCTATCTGAACTTCTGGT
LOC_Os11g38630
OsAffx.19235.1.S1_at--1160--9471Chr11:22405809..22405833 (25 bp)
TCTGCAAGGGTGTTCGCTTCTCAGC
LOC_Os11g38630
OsAffx.19235.1.S1_at--1107--9091Chr11:22406741..22406765 (25 bp)
TGCTCGCAATCAGGACAAGTGGCTC
LOC_Os11g38630
OsAffx.19235.1.S1_at--596--10771Chr11:22406891..22406912 (22 bp)
TTGAGGCAGCAGATTCCTGGGAGCT
LOC_Os11g38630
OsAffx.19235.1.S1_at--439--10751Chr11:22406918..22406942 (25 bp)
TTGAACGCTTCAGTGTCTGCAGGCT
LOC_Os11g38630
Target Sequence 
CTTCTGTGAAGTCCAGTCTCTGTAAAATTGCAAATGATAACATGTTTCAGAAGCTCCAATCTGGAAAAAGAATTGCATCT
GAGGTTGTGGCAACAGTTTTTCAAGGGCTGCATATATCGGAAGCTTCTTTGCATTTTTGTTTCAACAGTGAGATTGAGGG
GCGTGTAATCAATTCCTTTGCAGACCTTCCTGTTCTATATGATCAGCAGTTATGCTTTGAGGACAATTGCGAGTATTGTG
GAAGTTCGAAGAAAGTTGATGTTTCTCCGTTTAACACGCCGCATTTCTTTACTATAGGTTTAGACTGGTTTGGTGGCAGT
GAAGACCAGGGTCGGCTATCTGAACTTCTGGTTGGCATTGCACATCCCCTTGACATTAAACTTCTCTGCAAGGGTGTTCG
CTTCTCAGCAAACTATTCTCTGGCCTCAATGATCTCCTATGCTGATGGGCGCTACGTCTGCTTTGCTCGCAATCAGGACA
AGTGGCTCATCTGTGATGCTGAGAATGTTGAGGCAGCAGATTCCTGGGAGCTGTTGCTTGAACGCTTCAGTGTCTGCAGG
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19235.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis