Browse Element(s) Details


OsAffx.7344.1.S1_at

Description tigr:9639.m03511
TID=OsAffx.7344.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Ubiquitin carboxyl-terminal hydrolase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3864011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38620OsAffx.19234.1.S1_at10/1111+22386079..22393195hypothetical protein
LOC_Os11g38630OsAffx.19235.1.S1_at11/1111+22399361..22406979hypothetical protein
LOC_Os11g38640OsAffx.7344.1.S1_at11/1111+22409356..22415812expressed protein
LOC_Os11g38650Os.11107.1.S1_at11/1111+22424828..22426712UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os11g38660NANA11+22440257..22442781transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004221molecular_functionubiquitin thiolesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7344.1.S1_at--847--7891Chr11:22413908..22413932 (25 bp)
GGTTGAGCTATCTGAAGTTCTGGTT
LOC_Os11g38640
OsAffx.7344.1.S1_at--794--2051Chr11:22413959..22413983 (25 bp)
ACTTCTTTGCAAGGGTGTTCACTCC
LOC_Os11g38640
OsAffx.7344.1.S1_at--761--9071Chr11:22415018..22415042 (25 bp)
TGCTTTGCGCGCGACCAGGACAAGT
LOC_Os11g38640
OsAffx.7344.1.S1_at--777--8311Chr11:22415043..22415067 (25 bp)
GGCTCAGCTCTGATGCCAAAACTGT
LOC_Os11g38640
OsAffx.7344.1.S1_at--781--10751Chr11:22415535..22415559 (25 bp)
TTGAACGCTTCAGAGACTGCACGCT
LOC_Os11g38640
OsAffx.7344.1.S1_at--126--6051Chr11:22415596..22415620 (25 bp)
GAGATCATCGACAAATTTGCCTGGA
LOC_Os11g38640
OsAffx.7344.1.S1_at--488--8291Chr11:22415657..22415681 (25 bp)
GGCTTGTTGTTACATGTCACCATCT
LOC_Os11g38640
OsAffx.7344.1.S1_at--301--2391Chr11:22415688..22415712 (25 bp)
AAACTGTTCTGATACACAACCTCCT
LOC_Os11g38640
OsAffx.7344.1.S1_at--327--1751Chr11:22415706..22415730 (25 bp)
ACCTCCTTTGTTGTAAATGCGTGAT
LOC_Os11g38640
OsAffx.7344.1.S1_at--949--4651Chr11:22415724..22415748 (25 bp)
GCGTGATAACATTTTCTTTCCGGCC
LOC_Os11g38640
OsAffx.7344.1.S1_at--402--10311Chr11:22415736..22415760 (25 bp)
TTTCTTTCCGGCCATGTCATGGTAA
LOC_Os11g38640
Target Sequence 
GGTTGAGCTATCTGAAGTTCTGGTTGGCATTGCACATCCCCTTGATATTAAACTTCTTTGCAAGGGTGTTCACTCCTCAG
CAAACTATTCTCTGACCTCAATGATCTCCTATGCTGATGGGCGCTACATCTGCTTTGCGCGCGACCAGGACAAGTGGCTC
AGCTCTGATGCCAAAACTGTTGAGACAAAAGATTCTTGGGAGCAGTTGCTTGAACGCTTCAGAGACTGCACGCTCCAACC
TGAAGTTCTATTCTTCGAGGTCATCAAGTAGAGATCATCGACAAATTTGCCTGGAAGAACCGTGTCATAACATAACTTCA
GAGTTAAATTTGGCTTGTTGTTACATGTCACCATCTTGATGCAAACTGTTCTGATACACAACCTCCTTTGTTGTAAATGC
GTGATAACATTTTCTTTCCGGCCATGTCATGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7344.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis