Browse Element(s) Details


Os.11107.1.S1_at

Description gb:AK100744.1
DB_XREF= gi:32985953
TID=Os.11107.1
CNT=36
FEA=FLmRNA
TIER=FL+Stack
STK=11
UG=Os.11107 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023118G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023118G04, full insert sequence.
FL= gb:AK100744.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3865011/11UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38630OsAffx.19235.1.S1_at11/1111+22399361..22406979hypothetical protein
LOC_Os11g38640OsAffx.7344.1.S1_at11/1111+22409356..22415812expressed protein
LOC_Os11g38650Os.11107.1.S1_at11/1111+22424828..22426712UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os11g38660NANA11+22440257..22442781transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38670OsAffx.19236.1.S1_at11/1111+22448108..22452602DEAD-box protein 3, X-chromosomal, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006805biological_processxenobiotic metabolism
GO:0009636biological_processresponse to toxin
GO:0009808biological_processlignin metabolism
GO:0042178biological_processxenobiotic catabolism
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0035251molecular_functionUDP-glucosyltransferase activity
GO:0047209molecular_functionconiferyl-alcohol glucosyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11107.1.S1_at--231--8271Chr11:22425320..22425344 (25 bp)
GGCAGAACGCCGTCATGCTGACGGA
LOC_Os11g38650
Os.11107.1.S1_at--109--9151Chr11:22425194..22425218 (25 bp)
TGCGTGCTAAGGTAGCTGAGCTACA
LOC_Os11g38650
Os.11107.1.S1_at--149--4371Chr11:22425131..22425155 (25 bp)
CCACGTCAGCGCTCGATGAGGTGGT
LOC_Os11g38650
Os.11107.1.S1_at--411--5331Chr11:22425085..22425109 (25 bp)
GAAGTAGGTGGCATCTTGACAAAAT
LOC_Os11g38650
Os.11107.1.S1_at--1027--4431Chr11:22425053..22425077 (25 bp)
GCCATATATATGCACCTCCTTGATG
LOC_Os11g38650
Os.11107.1.S1_at--1012--4311Chr11:22425036..22425060 (25 bp)
CCTTGATGGCTGTACGGTGTGTCTA
LOC_Os11g38650
Os.11107.1.S1_at--637--8751Chr11:22425026..22425050 (25 bp)
TGTACGGTGTGTCTACTCCTCTTGT
LOC_Os11g38650
Os.11107.1.S1_at--894--1971Chr11:22425012..22425036 (25 bp)
ACTCCTCTTGTCTCTTTTTTATCAT
LOC_Os11g38650
Os.11107.1.S1_at--207--10171Chr11:22424993..22425017 (25 bp)
TATCATTGTGCACTGGATTTTCTTG
LOC_Os11g38650
Os.11107.1.S1_at--279--991Chr11:22424966..22424990 (25 bp)
AGGTAGTACGTGTGGTTCGCATGTA
LOC_Os11g38650
Os.11107.1.S1_at--847--6691Chr11:22424952..22424976 (25 bp)
GTTCGCATGTACGTGAGGAGATTAG
LOC_Os11g38650
Target Sequence 
GGCAGAACGCCGTCATGCTGACGGAGGGCGCCGGGGCCGCGATACGGGTGCCCGAGTCCAAGGGGAAGGAGAAGATCGCG
GCGGTCGTCAGGGAGATGATGGTAGGGGAAGGGAGGGGCGCGGCGGTGCGTGCTAAGGTAGCTGAGCTACAGAAGATGGC
GACGGATGGCCTCCGAGACGGTGGCGCCGCCACGTCAGCGCTCGATGAGGTGGTGGACAAGTGGACAGGAGGGGAGAAGT
AGGTGGCATCTTGACAAAATACACTTGGCCATATATATGCACCTCCTTGATGGCTGTACGGTGTGTCTACTCCTCTTGTC
TCTTTTTTATCATTGTGCACTGGATTTTCTTGTTAGGTAGTACGTGTGGTTCGCATGTACGTGAGGAGATTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11107.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis