Browse Element(s) Details


OsAffx.19236.1.S1_at

Description tigr:9639.m03514
TID=OsAffx.19236.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to AY088091 ATP-dependent RNA helicase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3867011/11DEAD-box protein 3, X-chromosomal, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38650Os.11107.1.S1_at11/1111+22424828..22426712UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os11g38660NANA11+22440257..22442781transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38670OsAffx.19236.1.S1_at11/1111+22448108..22452602DEAD-box protein 3, X-chromosomal, putative, expressed
LOC_Os11g38680OsAffx.19237.1.S1_at11/1111+22456307..22456804hypothetical protein
LOC_Os11g38690Os.14491.2.S1_x_at2/1111+22460723..22464420transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38690Os.47463.1.S1_x_at1/1111+22460723..22464420transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38700NANA11+22466952..22470284transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38710OsAffx.7345.1.S1_at11/1111+22472331..22472933hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19236.1.S1_at--236--8831Chr11:22451648..22451672 (25 bp)
TGATTCGTTGGAGCACTGGTTGTGT
LOC_Os11g38670
OsAffx.19236.1.S1_at--359--8571Chr11:22451678..22451702 (25 bp)
TGGATTTCCAGCTACTTCTATTCAC
LOC_Os11g38670
OsAffx.19236.1.S1_at--598--8132Chr11:22452123..22452147 (25 bp)
GGACATACTCCTATTCTAGTTGCAA
LOC_Os11g38670
OsAffx.19236.1.S1_at--510--6632Chr11:22452192..22452216 (25 bp)
GTTGTGAACTTTGATCTTCCCAATG
LOC_Os11g38670
OsAffx.19236.1.S1_at--283--10171Chr11:22452218..22452242 (25 bp)
TATAGATGATTACGTCCACAGGATT
LOC_Os11g38670
OsAffx.19236.1.S1_at--842--2311Chr11:22452265..22452289 (25 bp)
AAAGTGGTCTTGCAACTGCTTTCTT
LOC_Os11g38670
OsAffx.19236.1.S1_at--1087--671Chr11:22452292..22452316 (25 bp)
ATGAGAATAACTCTTCCATGGCAAG
LOC_Os11g38670
OsAffx.19236.1.S1_at--837--3211Chr11:22452313..22452337 (25 bp)
CAAGGTCTTTGGCTGAGCTAATGCA
LOC_Os11g38670
OsAffx.19236.1.S1_at--101--3231Chr11:22452348..22452372 (25 bp)
CAAGAGGTACCTGCGTGGTTGTCTC
LOC_Os11g38670
OsAffx.19236.1.S1_at--1026--611Chr11:22452376..22452400 (25 bp)
ATGCTGCTCGCCCATCTTATGGTGG
LOC_Os11g38670
OsAffx.19236.1.S1_at--815--7511Chr11:22452526..22452550 (25 bp)
GTGGATATGGTGGTTCCTCTGCATA
LOC_Os11g38670
Target Sequence 
TGATTCGTTGGAGCACTGGTTGTGTATGAATGGATTTCCAGCTACTTCTATTCACGGTGATAGAAACCAGCAGGAAAGAG
AGTATGCTTTGAGATCCTTCAAAAGTGGACATACTCCTATTCTAGTTGCAACTGATGTGGCAGCCCGGGGCCTTGACATT
CCTCATGTTGCTCATGTTGTGAACTTTGATCTTCCCAATGATATAGATGATTACGTCCACAGGATTGGGAGGACAGGGAG
GGCAGGAAAAAGTGGTCTTGCAACTGCTTTCTTCAATGAGAATAACTCTTCCATGGCAAGGTCTTTGGCTGAGCTAATGC
AAGAATCTAATCAAGAGGTACCTGCGTGGTTGTCTCGCTATGCTGCTCGCCCATCTTATGGTGGGGGTGGTGGGAGGAAC
AGAAGGTCCGGTGGTGGGAGCCGCTTCGGTGGCCGTGACTTCCGCAGGGATTCTTCCTCTGGAAGAGGTGGCGGTGACTA
CTATGGTGGAGGCAGCAGCGGTGGAGCTGGTGGATATGGTGGTTCCTCTGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19236.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis