Browse Element(s) Details


OsAffx.7345.1.S1_at

Description tigr:9639.m03517
TID=OsAffx.7345.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3871011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g38670OsAffx.19236.1.S1_at11/1111+22448108..22452602DEAD-box protein 3, X-chromosomal, putative, expressed
LOC_Os11g38680OsAffx.19237.1.S1_at11/1111+22456307..22456804hypothetical protein
LOC_Os11g38690Os.14491.2.S1_x_at2/1111+22460723..22464420transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38690Os.47463.1.S1_x_at1/1111+22460723..22464420transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38700NANA11+22466952..22470284transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g38710OsAffx.7345.1.S1_at11/1111+22472331..22472933hypothetical protein
LOC_Os11g38720Os.33601.3.S1_x_at2/1111+22478148..22482243retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g38720OsAffx.20631.1.S1_x_at2/1111+22478148..22482243retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7345.1.S1_at--339--4052Chr11:22472441..22472465 (25 bp)
CGACGACATCGGGTGGTTCCACTGC
LOC_Os11g38710
OsAffx.7345.1.S1_at--1013--2091Chr11:22472446..22472470 (25 bp)
ACATCGGGTGGTTCCACTGCGAGGC
LOC_Os11g38710
OsAffx.7345.1.S1_at--524--892Chr11:22472467..22472491 (25 bp)
AGGCCTGCGACGAGCCGAGGCTGCT
LOC_Os11g38710
OsAffx.7345.1.S1_at--297--1832Chr11:22472635..22472659 (25 bp)
ACGCCGTCGTGCACCCGGAGGACTG
LOC_Os11g38710
OsAffx.7345.1.S1_at--988--9411Chr11:22472641..22472665 (25 bp)
TCGTGCACCCGGAGGACTGCAAGGA
LOC_Os11g38710
OsAffx.7345.1.S1_at--773--8011Chr11:22472651..22472675 (25 bp)
GGAGGACTGCAAGGACCTGCTCTAC
LOC_Os11g38710
OsAffx.7345.1.S1_at--282--5731Chr11:22472655..22472679 (25 bp)
GACTGCAAGGACCTGCTCTACATAG
LOC_Os11g38710
OsAffx.7345.1.S1_at--808--2911Chr11:22472661..22472685 (25 bp)
AAGGACCTGCTCTACATAGGCGACT
LOC_Os11g38710
OsAffx.7345.1.S1_at--402--1751Chr11:22472665..22472689 (25 bp)
ACCTGCTCTACATAGGCGACTTCGA
LOC_Os11g38710
OsAffx.7345.1.S1_at--1053--3751Chr11:22472670..22472694 (25 bp)
CTCTACATAGGCGACTTCGACGCGT
LOC_Os11g38710
OsAffx.7345.1.S1_at--69--1671Chr11:22472860..22472884 (25 bp)
AGCCGTGGGACGAACGCCACCGTGA
LOC_Os11g38710
Target Sequence 
CGACGACATCGGGTGGTTCCACTGCGAGGCCTGCGACGAGCCGAGGCTGCTGTACGACCGCCGCCGCGTGTCCGGCGGGT
GCGCGCACGAGCTCTGCGTCGCCTGCGTCGTCGGCCACGTCGAGGCCCGCGTCGCGGCGGGGGAGGTGCCCGTGCGCTGC
CCTTTCCAATTCCCGGCCGGCTCCTCCCACTGCGACGCCGTCGTGCACCCGGAGGACTGCAAGGACCTGCTCTACATAGG
CGACTTCGACGCGTGGTGCGTCGCGCTCTGCGAGCTCGCCGTCGGCGGCCCGGGCGCCTTCGCGCGCTACCCCAACCCGG
ACTGCGGCGAGCGGCTCGACACCGGCGCCGGCGGCGAGCGCGCGGTGTCCGGGGCGACCTGCCTCCGCTGCTCCCGCGCG
TTCTGCCTGCGGTGCGAGCAGCCGTGGGACGAACGCCACCGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7345.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis