Browse Element(s) Details


Os.18933.1.S1_at

Description gb:AK107161.1
DB_XREF= gi:32992370
TID=Os.18933.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18933 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-F02, full insert sequence.
FL= gb:AK107161.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g126805/11Cytochrome P450 74A3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g12650Os.11236.1.S1_at11/112+6599222..6606524Peptidase family M1 containing protein, expressed
LOC_Os02g12660Os.15687.2.A1_at11/112+6609459..6613879protein kinase family protein, putative, expressed
LOC_Os02g12660OsAffx.15330.1.S1_x_at1/112+6609459..6613879protein kinase family protein, putative, expressed
LOC_Os02g12670Os.11356.1.A1_at10/112+6616308..6623367protein kinase family protein, putative, expressed
LOC_Os02g12680Os.18933.1.S1_at5/112+6628383..6630103Cytochrome P450 74A3, putative, expressed
LOC_Os02g12690Os.7087.1.S1_at11/112+6637973..6639831Cytochrome P450 74A4, putative, expressed
LOC_Os02g12700Os.52088.1.S1_at11/112+6644227..6645926expressed protein
LOC_Os02g12710NANA2+6648410..6649777hypothetical protein
LOC_Os02g12720OsAffx.12009.1.S1_at11/112+6651470..6652921expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009611biological_processresponse to wounding
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0019373biological_processepoxygenase P450 pathway
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0009978molecular_functionallene oxide synthase activity
GO:0016836molecular_functionhydro-lyase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18933.1.S1_at--970--10511Chr02:6629925..6629949 (25 bp)
TTCACGTCGCTGACACGGGCGTCGT
LOC_Os02g12680
Os.18933.1.S1_at--333--7211Chr02:6629945..6629969 (25 bp)
GTCGTCGGGATAGCACGCACGTCGA
LOC_Os02g12680
Os.18933.1.S1_at--512--4151Chr02:6629979..6630003 (25 bp)
CGCGCCGTGCTGTGATTTAGTACTG
LOC_Os02g12680
Os.18933.1.S1_at--724--4231Chr02:6629983..6630007 (25 bp)
CCGTGCTGTGATTTAGTACTGTACT
LOC_Os02g12680
Os.18933.1.S1_at--665--1171Chr02:6629997..6630021 (25 bp)
AGTACTGTACTAGGTTGGTGGATGT
LOC_Os02g12680
Os.18933.1.S1_at--116--7411NONE
GTGATATGATCCTACTGCTAGTCTG
NONE
Os.18933.1.S1_at--1144--6491NONE
GATATGATCCTACTGCTAGTCTGCT
NONE
Os.18933.1.S1_at--67--3711Chr02:6630364..6630388 (25 bp)
CTATGGTGGATATGTGAGTTGATTT
NONE
Os.18933.1.S1_at--586--8831NONE
TGATTTGTAATCTGTCTGGTCTTAA
NONE
Os.18933.1.S1_at--660--7071NONE
GTAATCTGTCTGGTCTTAAACTAAT
NONE
Os.18933.1.S1_at--188--7732Chr02:9088061..9088553 (25 bp)
GGTCTTAAACTAATACTCCCTCCAT
NONE
Target Sequence 
TTCACGTCGCTGACACGGGCGTCGTCGGGATAGCACGCACGTCGACGTCACGTGCGCGCCGTGCTGTGATTTAGTACTGT
ACTAGGTTGGTGGATGTTTTAATTGCGTGGTTAATTATTAATCNCGCATAAAGTATTAATCATGTTTTATCATCTNNNNN
NAANNNNNNNANTNNNNNTTTTGATTTTATGTAAAGTTTGATTAATTAATTTGTTACAAGGGGAAATGAATAATGTAGTG
ATATGATCCTACTGCTAGTCTGCTATGGTGGATATGTGAGTTGATTTGTAATCTGTCTGGTCTTAAACTAATACTCCCTC
CAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18933.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis