Browse Element(s) Details


Os.18972.1.S1_at

Description gb:AK065468.1
DB_XREF= gi:32975486
TID=Os.18972.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18972 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013020G14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013020G14, full insert sequence.
FL= gb:AK065468.1 gb:AK061669.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2281011/11protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22800OsAffx.4904.1.S1_at10/116+13277775..13278303hypothetical protein
LOC_Os06g22800Os.37711.3.S1_x_at1/116+13277775..13278303hypothetical protein
LOC_Os06g22810Os.18972.1.S1_at11/116+13296088..13300240protein kinase, putative, expressed
LOC_Os06g22820Os.11911.1.S1_at11/116+13301551..13305575Protein kinase domain containing protein, expressed
LOC_Os06g22830OsAffx.27779.1.S1_at11/116+13313581..13317394hypothetical protein
LOC_Os06g22840OsAffx.17770.1.S1_x_at1/116+13321640..13323037hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18972.1.S1_at--69--5891Chr06:13299685..13299709 (25 bp)
GAGCGGCCATCCATGGGAGATGTCC
LOC_Os06g22810
Os.18972.1.S1_at--977--8511Chr06:13299712..13299736 (25 bp)
TGGAACTTGGAGTACGTCCTGCAGC
LOC_Os06g22810
Os.18972.1.S1_at--159--5491Chr06:13299780..13299804 (25 bp)
GAACAGGATTGTCGAACTCCCGTCG
LOC_Os06g22810
Os.18972.1.S1_at--352--2691Chr06:13299854..13299878 (25 bp)
AAGCTGGAGCTTCACATGAGCCTGA
LOC_Os06g22810
Os.18972.1.S1_at--720--691Chr06:13299869..13299893 (25 bp)
ATGAGCCTGATCATGACCTCTCCGA
LOC_Os06g22810
Os.18972.1.S1_at--484--9291Chr06:13299889..13299913 (25 bp)
TCCGACGTTTCCATGAGCAGGGTGT
LOC_Os06g22810
Os.18972.1.S1_at--735--3471Chr06:13299906..13299930 (25 bp)
CAGGGTGTTCTCTCAGCTAATCAAA
LOC_Os06g22810
Os.18972.1.S1_at--397--611Chr06:13300070..13300094 (25 bp)
ATGCTCCATGTTCTACTGAACGATG
LOC_Os06g22810
Os.18972.1.S1_at--640--4451Chr06:13300112..13300136 (25 bp)
GCCTTATTAGCCATCGTGAGCAGAT
LOC_Os06g22810
Os.18972.1.S1_at--391--111Chr06:13300160..13300184 (25 bp)
ATTCTGCTCTAGAACAGCGTGTACT
LOC_Os06g22810
Os.18972.1.S1_at--1034--1611Chr06:13300175..13300199 (25 bp)
AGCGTGTACTGCTGCCCTGGCAAAA
LOC_Os06g22810
Target Sequence 
GAGCGGCCATCCATGGGAGATGTCCTGTGGAACTTGGAGTACGTCCTGCAGCTCCAGGATGCAGATTCATCGACAGTATC
AGATGTAAACAGCATGAACAGGATTGTCGAACTCCCGTCGCAAGTCCAGAACATCGGCGCCCTCGAGAGCATCAGCGTGA
CAATGGCGGAAGCTGGAGCTTCACATGAGCCTGATCATGACCTCTCCGACGTTTCCATGAGCAGGGTGTTCTCTCAGCTA
ATCAAAGCTGAGGGAAGGTGAAAGACAAACTGGGTAATCTGTAGTGTACTTTGTAGAAGTGAGGAAGCCCTGAAAGTTGT
TTCTTATTTACTTCAGAGATCATATGTAATTGTTCTTTCTTTTTTTCTTTCTTTCCTTCTTTCTCATGCTCCATGTTCTA
CTGAACGATGTTTTCAAATTTGTTATGGCCTTATTAGCCATCGTGAGCAGATAGAGCTTTTCTTGTTTTGAATCTATTCT
GCTCTAGAACAGCGTGTACTGCTGCCCTGGCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18972.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis