Browse Element(s) Details


Os.11911.1.S1_at

Description gb:AK120969.1
DB_XREF= gi:37990592
TID=Os.11911.1
CNT=23
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.11911 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-028-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023040M24, full insert sequence.
FL= gb:AK059487.1 gb:AK120969.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2282011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22800OsAffx.4904.1.S1_at10/116+13277775..13278303hypothetical protein
LOC_Os06g22800Os.37711.3.S1_x_at1/116+13277775..13278303hypothetical protein
LOC_Os06g22810Os.18972.1.S1_at11/116+13296088..13300240protein kinase, putative, expressed
LOC_Os06g22820Os.11911.1.S1_at11/116+13301551..13305575Protein kinase domain containing protein, expressed
LOC_Os06g22830OsAffx.27779.1.S1_at11/116+13313581..13317394hypothetical protein
LOC_Os06g22840OsAffx.17770.1.S1_x_at1/116+13321640..13323037hypothetical protein
LOC_Os06g22850OsAffx.4905.1.S1_at11/116+13326935..13327407Microfibrillar-associated protein 1, putative

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Gene Ontology Classification
GO idTypeName
GO:0000079biological_processregulation of cyclin dependent protein kinase activity
GO:0000087biological_processM phase of mitotic cell cycle
GO:0000910biological_processcytokinesis
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0010078biological_processmaintenance of root meristem identity
GO:0042023biological_processDNA endoreduplication
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0009574cellular_componentpreprophase band
GO:0010005cellular_componentcortical microtubule (sensu Viridiplantae)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
GO:0019912molecular_functioncyclin-dependent protein kinase activating kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11911.1.S1_at--573--10411Chr06:13302127..13302151 (25 bp)
TTATCAGTGTTCTGGGCAACATCAC
LOC_Os06g22820
Os.11911.1.S1_at--488--9231Chr06:13302090..13302114 (25 bp)
TCCAGGCTGTTCAAATCTGCCAGAT
LOC_Os06g22820
Os.11911.1.S1_at--691--2711Chr06:13302019..13302043 (25 bp)
AAGCATGCCTGCCTGATAGATCTGC
LOC_Os06g22820
Os.11911.1.S1_at--531--4351Chr06:13301941..13301965 (25 bp)
CCAGTGCTGCCGACTTGCTGAATGA
LOC_Os06g22820
Os.11911.1.S1_at--250--4751Chr06:13301925..13301949 (25 bp)
GCTGAATGATCCATACTTCGCCGAA
LOC_Os06g22820
Os.11911.1.S1_at--898--10531Chr06:13301909..13301933 (25 bp)
TTCGCCGAAGAACCATTACCTGTAC
LOC_Os06g22820
Os.11911.1.S1_at--718--1791Chr06:13301756..13301780 (25 bp)
ACCGACAAGGGTTTCAGCATACGCT
LOC_Os06g22820
Os.11911.1.S1_at--1077--1531Chr06:13301741..13301765 (25 bp)
AGCATACGCTTCTCGTGATCAAGAA
LOC_Os06g22820
Os.11911.1.S1_at--872--10791Chr06:13301700..13301724 (25 bp)
TTGTATCTTCCTGAACATGCTGGCA
LOC_Os06g22820
Os.11911.1.S1_at--464--6191Chr06:13301675..13301699 (25 bp)
GAGGAATTTCTGTCGCAGCATATTG
LOC_Os06g22820
Os.11911.1.S1_at--626--6631Chr06:13301597..13301621 (25 bp)
GTTGTGTACAACAGCACCAGCTTTC
LOC_Os06g22820
Target Sequence 
TTATCAGTGTTCTGGGCAACATCACAGAAGAAACCTTTCCAGGCTGTTCAAATCTGCCAGATTACAATAAGATTTTCTTC
AACAAAGTCGAGAAGCCAATAGGCCTCGAAGCATGCCTGCCTGATAGATCTGCTTCTGAAGTTAGTATCATAAAGAGGCT
ACTTTGCTATGACCCAACAAAGAGGGCCAGTGCTGCCGACTTGCTGAATGATCCATACTTCGCCGAAGAACCATTACCTG
TACCTATTGAAGGATTACAAGTCCCAGAATCAAAGGATGAAGATGATGACAGCACAGAAGAATGGGCTAATTTCAGGGGT
GGAGATTCAGATTCAGACTTCGATGAATTCGGCAGCATGGATGTCACCAAGACCGACAAGGGTTTCAGCATACGCTTCTC
GTGATCAAGAATGATTGATGAGGGTAATTGTATCTTCCTGAACATGCTGGCAGAGGAATTTCTGTCGCAGCATATTGTAT
GGCATTTTGATAATTGTTTTACTATTTGTAAACTGCGATATGTTCATTATGTTGTGTACAACAGCACCAGCTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11911.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis