Browse Element(s) Details


OsAffx.4905.1.S1_at

Description tigr:9634.m02247
TID=OsAffx.4905.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to contains similarity to ATP synthase BB
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2285011/11Microfibrillar-associated protein 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22820Os.11911.1.S1_at11/116+13301551..13305575Protein kinase domain containing protein, expressed
LOC_Os06g22830OsAffx.27779.1.S1_at11/116+13313581..13317394hypothetical protein
LOC_Os06g22840OsAffx.17770.1.S1_x_at1/116+13321640..13323037hypothetical protein
LOC_Os06g22850OsAffx.4905.1.S1_at11/116+13326935..13327407Microfibrillar-associated protein 1, putative
LOC_Os06g22860Os.22949.1.S1_at2/116+13334913..13336356hypothetical protein
LOC_Os06g22870OsAffx.15562.1.S1_s_at11/116+13344334..13348183Auxin-responsive protein IAA8, putative, expressed
LOC_Os06g22870Os.7687.1.S1_at10/116+13344334..13348183Auxin-responsive protein IAA8, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4905.1.S1_at--411--5971Chr06:13327022..13327105 (25 bp)
GAGAAGCTGCCGATCTTCATACATA
LOC_Os06g22850
OsAffx.4905.1.S1_at--12--10531Chr06:13327096..13327120 (25 bp)
TTCATACATAAGACACAGCGGGTCA
LOC_Os06g22850
OsAffx.4905.1.S1_at--914--1411Chr06:13327106..13327130 (25 bp)
AGACACAGCGGGTCACAATCACGGA
LOC_Os06g22850
OsAffx.4905.1.S1_at--533--1631Chr06:13327112..13327136 (25 bp)
AGCGGGTCACAATCACGGAGAGGAA
LOC_Os06g22850
OsAffx.4905.1.S1_at--872--3291Chr06:13327119..13327143 (25 bp)
CACAATCACGGAGAGGAAGCGGATA
LOC_Os06g22850
OsAffx.4905.1.S1_at--1123--4671Chr06:13327137..13327161 (25 bp)
GCGGATAGAAGATGTTGCTCGGCAA
LOC_Os06g22850
OsAffx.4905.1.S1_at--930--10611Chr06:13327151..13327175 (25 bp)
TTGCTCGGCAACTCGAGGAGGTTCT
LOC_Os06g22850
OsAffx.4905.1.S1_at--361--6151Chr06:13327165..13327189 (25 bp)
GAGGAGGTTCTCATGAAGAGGATAA
LOC_Os06g22850
OsAffx.4905.1.S1_at--404--2031Chr06:13327231..13327255 (25 bp)
ACTAGGAATGAGTTGCGGATTAATA
LOC_Os06g22850
OsAffx.4905.1.S1_at--810--4591Chr06:13327268..13327292 (25 bp)
GCGAAGAGTCTGATATTGAAATTGA
LOC_Os06g22850
OsAffx.4905.1.S1_at--491--5771Chr06:13327341..13327365 (25 bp)
GACGAATCGGGAGATTGCGAGAACT
LOC_Os06g22850
Target Sequence 
GAGAAGCTGCCGATCTTCATACATAAGACACAGCGGGTCACAATCACGGAGAGGAAGCGGATAGAAGATGTTGCTCGGCA
ACTCGAGGAGGTTCTCATGAAGAGGATAAAGAAGCGGAAGATTGAGACGAGGCAGATTGTGGTGGAGGAGACTAGGAATG
AGTTGCGGATTAATAAGATTATTAAGAGCGAAGAGTCTGATATTGAAATTGAAGTTAATACAGATGATGAGGAGAATAAG
GCGGAGGAGTATGAGGCATGGACGAATCGGGAGATTGCGAGAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4905.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis