Browse Element(s) Details


OsAffx.27779.1.S1_at

Description tigr:9634.m02245
TID=OsAffx.27779.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2283011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g22810Os.18972.1.S1_at11/116+13296088..13300240protein kinase, putative, expressed
LOC_Os06g22820Os.11911.1.S1_at11/116+13301551..13305575Protein kinase domain containing protein, expressed
LOC_Os06g22830OsAffx.27779.1.S1_at11/116+13313581..13317394hypothetical protein
LOC_Os06g22840OsAffx.17770.1.S1_x_at1/116+13321640..13323037hypothetical protein
LOC_Os06g22850OsAffx.4905.1.S1_at11/116+13326935..13327407Microfibrillar-associated protein 1, putative
LOC_Os06g22860Os.22949.1.S1_at2/116+13334913..13336356hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27779.1.S1_at--703--7711Chr06:13313628..13313652 (25 bp)
GGGTGTAGCAGCTCGATCCATCCGC
LOC_Os06g22830
OsAffx.27779.1.S1_at--308--1591Chr06:13313674..13313698 (25 bp)
AGCTCCGAATCTGAGGCGACCGTCA
LOC_Os06g22830
OsAffx.27779.1.S1_at--770--7792Chr06:13313703..13313727 (25 bp)
GGTATCCACCCTGTTAGTGGGTCTG
LOC_Os06g22830
OsAffx.27779.1.S1_at--394--1091Chr06:13313718..13313742 (25 bp)
AGTGGGTCTGTATTGGTTACTTAAG
LOC_Os06g22830
OsAffx.27779.1.S1_at--354--5652Chr07:25658516..25658567 (24 bp)
GACAGCATCAAAATTCTTTACACAG
NONE
OsAffx.27779.1.S1_at--958--6511Chr06:13315474..13315498 (25 bp)
GATATATTTACTTGGCTGTGCATGC
LOC_Os06g22830
OsAffx.27779.1.S1_at--388--4731Chr06:13315488..13315512 (25 bp)
GCTGTGCATGCAGTCTGGCAATCAT
LOC_Os06g22830
OsAffx.27779.1.S1_at--52--1231Chr06:13316929..13316948 (20 bp)
AGTTCAGATTGTGATGTCCCTCGGT
LOC_Os06g22830
OsAffx.27779.1.S1_at--194--1071Chr06:13316971..13316995 (25 bp)
AGGGTACTGGATCTAGCTGCCGTCA
LOC_Os06g22830
OsAffx.27779.1.S1_at--1113--1591Chr06:13316985..13317009 (25 bp)
AGCTGCCGTCAGGATCATGCGATGG
LOC_Os06g22830
OsAffx.27779.1.S1_at--1143--9271Chr06:13317031..13317055 (25 bp)
TCCGCTATGGAGCAAACGGGACCAC
LOC_Os06g22830
Target Sequence 
GGGTGTAGCAGCTCGATCCATCCGCTTCCTCCTACACCATTCCCTCAGCTCCGAATCTGAGGCGACCGTCACCCTGGTAT
CCACCCTGTTAGTGGGTCTGTATTGGTTACTTAAGAGTATCTATTTTTCTAGATTGACAGCATCAAAATTCTTTACACAG
ATATATTTACTTGGCTGTGCATGCAGTCTGGCAATCATGAAGGGGCGCACCTTTAAAGGTGCAGTTCAGATTGTGATGTC
CCTCGGTGATGAAGGAGAGACGGGTGGACAGGGTACTGGATCTAGCTGCCGTCAGGATCATGCGATGGCCGGCGGACTTG
CAGGCGGAGTCCGCTATGGAGCAAACGGGACCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27779.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis