Browse Element(s) Details


Os.19026.1.S1_at

Description gb:AK073022.1
DB_XREF= gi:32983045
TID=Os.19026.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19026 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149P22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149P22, full insert sequence.
FL= gb:AK073022.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0821011/11Cytidylyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08190Os.14272.1.A1_at11/117+4173780..4179946peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g08200OsAffx.16151.1.S1_at11/117+4180344..418234837 kDa inner envelope membrane protein, chloroplast precursor, putative, expressed
LOC_Os07g08210Os.19026.1.S1_at11/117+4183505..4186325Cytidylyltransferase family protein, expressed
LOC_Os07g08220OsAffx.16152.1.S1_at11/117+4189376..4193389expressed protein
LOC_Os07g08230OsAffx.5252.1.S1_at11/117+4194715..4195365hypothetical protein
LOC_Os07g08240Os.18977.1.S1_at11/117+4197562..4199468ZmEBE-1 protein, putative, expressed
LOC_Os07g08250NANA7+4205285..4205608hypothetical protein
LOC_Os07g08260OsAffx.5254.1.S1_at11/117+4210867..4211387hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0016779molecular_functionnucleotidyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19026.1.S1_at--896--9631Chr07:4183981..4184005 (25 bp)
TCAGGCACATATCCACTGCCAGTAT
LOC_Os07g08210
Os.19026.1.S1_at--394--1431Chr07:4183941..4183965 (25 bp)
AGAACCGCGGAAGTGGTGTGACCTA
LOC_Os07g08210
Os.19026.1.S1_at--999--5971Chr07:4183820..4183844 (25 bp)
GAGACAGTCCAAGCTGCAATTCACT
LOC_Os07g08210
Os.19026.1.S1_at--510--4751Chr07:4183808..4183832 (25 bp)
GCTGCAATTCACTCTACTAAATCCT
LOC_Os07g08210
Os.19026.1.S1_at--863--5271Chr07:4183783..4183807 (25 bp)
GAATGATCCTCCATAGTCTCAACAA
LOC_Os07g08210
Os.19026.1.S1_at--201--751Chr07:4183717..4183741 (25 bp)
ATGTTTGAAACTTGTCCCAGCTTCC
LOC_Os07g08210
Os.19026.1.S1_at--591--9211Chr07:4183695..4183719 (25 bp)
TCCAGGGCCCTGTAAAAGTATTACT
LOC_Os07g08210
Os.19026.1.S1_at--543--2191Chr07:4183648..4183672 (25 bp)
ACAAATTCAATCTTAGCTCCTGGGA
LOC_Os07g08210
Os.19026.1.S1_at--841--9991Chr07:4183635..4183659 (25 bp)
TAGCTCCTGGGAACTTCCGCACTAA
LOC_Os07g08210
Os.19026.1.S1_at--788--10351Chr07:4183593..4183617 (25 bp)
TTTATTTCCTACCTTTGCCATGTGA
LOC_Os07g08210
Os.19026.1.S1_at--91--351Chr07:4183516..4183540 (25 bp)
ATAAATGAATTTGCTGCCCCTTCTG
LOC_Os07g08210
Target Sequence 
TCAGGCACATATCCACTGCCAGTATTATGGCAGCGGCTGCAGAACCGCGGAAGTGGTGTGACCTAGGAGATAATGCTATT
TCCAGAGCTGGAGAAGAAGAAAAAGGGGGTTCAAAGTGAAGCAAAAGGTAAAGCGGATTCAAAGTGAAACTATGGTAACA
AGAGACAGTCCAAGCTGCAATTCACTCTACTAAATCCTGAATGATCCTCCATAGTCTCAACAAGTAATCTGAAAGTGGTA
TTTTAGTTACCTTTTTGAGGAATTATGTTTGAAACTTGTCCCAGCTTCCAGGGCCCTGTAAAAGTATTACTTCACTCTGA
ATGATATAGTTGTACAAATTCAATCTTAGCTCCTGGGAACTTCCGCACTAACCAANTTTTACACATTTTTTTATTTCCTA
CCTTTGCCATGTGAATGTAAAAAAGGAAGTCANCTTGACGTTCTTTGGAGTAATGGTAAATCAATTATAAATGAATTTGC
TGCCCCTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis