Browse Element(s) Details


OsAffx.5254.1.S1_at

Description tigr:9635.m00776
TID=OsAffx.5254.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0826011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08210Os.19026.1.S1_at11/117+4183505..4186325Cytidylyltransferase family protein, expressed
LOC_Os07g08220OsAffx.16152.1.S1_at11/117+4189376..4193389expressed protein
LOC_Os07g08230OsAffx.5252.1.S1_at11/117+4194715..4195365hypothetical protein
LOC_Os07g08240Os.18977.1.S1_at11/117+4197562..4199468ZmEBE-1 protein, putative, expressed
LOC_Os07g08250NANA7+4205285..4205608hypothetical protein
LOC_Os07g08260OsAffx.5254.1.S1_at11/117+4210867..4211387hypothetical protein
LOC_Os07g08270OsAffx.28341.1.S1_at11/117+4218235..4220121hypothetical protein
LOC_Os07g08290Os.27415.1.S1_at11/117+4225000..4228382expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5254.1.S1_at--129--8431Chr07:4210980..4211000 (21 bp)
GGCCGTCTCTACTCTGCCACTGAAG
LOC_Os07g08260
OsAffx.5254.1.S1_at--903--5931Chr07:4211028..4211052 (25 bp)
GAGCAGCTGGCTGGGCACGGGATCC
LOC_Os07g08260
OsAffx.5254.1.S1_at--536--6311Chr07:4211100..4211124 (25 bp)
GATGACGGACGACCAAATCCAGCAA
LOC_Os07g08260
OsAffx.5254.1.S1_at--492--4731Chr07:4211167..4211191 (25 bp)
GCTGTGGCATCCGTGATGACGATGA
LOC_Os07g08260
OsAffx.5254.1.S1_at--275--711Chr07:4211188..4211212 (25 bp)
ATGATGACCTTGACGGCGATGGCAT
LOC_Os07g08260
OsAffx.5254.1.S1_at--763--851Chr07:4211206..4211230 (25 bp)
ATGGCATCCATGACCACAACCTGCT
LOC_Os07g08260
OsAffx.5254.1.S1_at--714--2211Chr07:4211221..4211245 (25 bp)
ACAACCTGCTTGCTGCGACGATGGC
LOC_Os07g08260
OsAffx.5254.1.S1_at--289--6371Chr07:4211276..4211300 (25 bp)
GATCCAGCAGGCTTTGGACGGTTGT
LOC_Os07g08260
OsAffx.5254.1.S1_at--665--1531Chr07:4211281..4211305 (25 bp)
AGCAGGCTTTGGACGGTTGTGATCA
LOC_Os07g08260
OsAffx.5254.1.S1_at--713--8291Chr07:4211285..4211309 (25 bp)
GGCTTTGGACGGTTGTGATCAAGTT
LOC_Os07g08260
OsAffx.5254.1.S1_at--70--8851Chr07:4211300..4211324 (25 bp)
TGATCAAGTTGTGGCGGATCTGGCT
LOC_Os07g08260
Target Sequence 
GGCCGTCTCTACTCTGCCACTGAAGCGCAGCAGCCAGCGGGGCGTGGGAGTAGAGCAGCTGGCTGGGCACGGGATCCGCC
GTCGCCGCGAAGGAGTTGGGGGTGGCGCGGTGGAGGGCAACCACGATGACGGACGACCAAATCCAGCAAAGACAGGAGGT
GGTGGATCCGGCCGTGGCGGATCCAGTGGTGGCTGTGGCATCCGTGATGACGATGATGACCTTGACGGCGATGGCATCCA
TGACCACAACCTGCTTGCTGCGACGATGGCTGGCGGCGGTGGGCGACCTTGGCCCGGGTGGATCCAGCAGGCTTTGGACG
GTTGTGATCAAGTTGTGGCGGATCTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5254.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis