Browse Element(s) Details


Os.18977.1.S1_at

Description gb:CB669318
DB_XREF= gi:29673043
DB_XREF=OSJNEe01L13.r
CLONE=OSJNEe01L13
TID=Os.18977.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.18977 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_200464.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0824011/11ZmEBE-1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08190Os.14272.1.A1_at11/117+4173780..4179946peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g08200OsAffx.16151.1.S1_at11/117+4180344..418234837 kDa inner envelope membrane protein, chloroplast precursor, putative, expressed
LOC_Os07g08210Os.19026.1.S1_at11/117+4183505..4186325Cytidylyltransferase family protein, expressed
LOC_Os07g08220OsAffx.16152.1.S1_at11/117+4189376..4193389expressed protein
LOC_Os07g08230OsAffx.5252.1.S1_at11/117+4194715..4195365hypothetical protein
LOC_Os07g08240Os.18977.1.S1_at11/117+4197562..4199468ZmEBE-1 protein, putative, expressed
LOC_Os07g08250NANA7+4205285..4205608hypothetical protein
LOC_Os07g08260OsAffx.5254.1.S1_at11/117+4210867..4211387hypothetical protein
LOC_Os07g08270OsAffx.28341.1.S1_at11/117+4218235..4220121hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18977.1.S1_at--960--9451Chr07:4198981..4199005 (25 bp)
TCTGGACATACCCATGTCTAGCACA
LOC_Os07g08240
Os.18977.1.S1_at--858--2071Chr07:4198986..4199010 (25 bp)
ACATACCCATGTCTAGCACAACGAA
LOC_Os07g08240
Os.18977.1.S1_at--765--3511Chr07:4199100..4199124 (25 bp)
CATGACACTATATTTTGATGATTTC
LOC_Os07g08240
Os.18977.1.S1_at--202--10451Chr07:4199209..4199233 (25 bp)
TTACAAGCTTGTCAGATAAACCAGT
LOC_Os07g08240
Os.18977.1.S1_at--270--2711Chr07:4199213..4199237 (25 bp)
AAGCTTGTCAGATAAACCAGTGACA
LOC_Os07g08240
Os.18977.1.S1_at--1076--31Chr07:4199240..4199264 (25 bp)
ATTGTTTGGTGGCTATGCCTTGAGA
LOC_Os07g08240
Os.18977.1.S1_at--437--7531Chr07:4199248..4199272 (25 bp)
GTGGCTATGCCTTGAGAAAGGATCA
LOC_Os07g08240
Os.18977.1.S1_at--896--5571Chr07:4199263..4199287 (25 bp)
GAAAGGATCAAAAGCCAAGTCCTCC
LOC_Os07g08240
Os.18977.1.S1_at--403--9391Chr07:4199374..4199398 (25 bp)
TCGATTTTCGTCTCGGATTTATATC
LOC_Os07g08240
Os.18977.1.S1_at--711--10611Chr07:4199380..4199404 (25 bp)
TTCGTCTCGGATTTATATCAAATTG
LOC_Os07g08240
Os.18977.1.S1_at--786--7931Chr07:4199388..4199412 (25 bp)
GGATTTATATCAAATTGTTACACTA
LOC_Os07g08240
Target Sequence 
TCTGGACATACCCATGTCTAGCACAACGAATCTAGATATACCNATGTCCGGATTCGTTATACTAGGATATGTCACNTTCC
ATNCTGGTTGAGATATTTTAGCNCGGNGNGAGTATGNGTCATGACACTATATTTTGATGATTTCAGGATCAAANTTCCGG
TGATTGGCAAATCTANTATGGCTTTAATGGGGATGCCAAGCTTNCAGGTTACTATCCAAGATCTCTNTTTACAAGCTTGT
CAGATAAACCAGTGACANTATTGTTTGGTGGCTATGCCTTGAGAAAGGATCAAAAGCCAAGTCCTCCNATGGGCAGCGGG
AATGCCCCNTTTAAAAANGCCGCATCATTTNGTAGTATCAANTTTTTTGATGCCGGTGGCAACGCCCATCCANTCGATTT
TCGTCTCGGATTTATATCAAATTGTTACACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18977.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis