Browse Element(s) Details


OsAffx.28341.1.S1_at

Description tigr:9635.m00777
TID=OsAffx.28341.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0827011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08220OsAffx.16152.1.S1_at11/117+4189376..4193389expressed protein
LOC_Os07g08230OsAffx.5252.1.S1_at11/117+4194715..4195365hypothetical protein
LOC_Os07g08240Os.18977.1.S1_at11/117+4197562..4199468ZmEBE-1 protein, putative, expressed
LOC_Os07g08250NANA7+4205285..4205608hypothetical protein
LOC_Os07g08260OsAffx.5254.1.S1_at11/117+4210867..4211387hypothetical protein
LOC_Os07g08270OsAffx.28341.1.S1_at11/117+4218235..4220121hypothetical protein
LOC_Os07g08290Os.27415.1.S1_at11/117+4225000..4228382expressed protein
LOC_Os07g08300NANA7+4238383..4245863retrotransposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28341.1.S1_at--434--7591Chr07:4219541..4219565 (25 bp)
GGGCATGGCCAAAGCTTGGCCCATT
LOC_Os07g08270
OsAffx.28341.1.S1_at--499--8411Chr07:4219558..4219582 (25 bp)
GGCCCATTCCTCGAAACCATAAGAG
LOC_Os07g08270
OsAffx.28341.1.S1_at--778--351Chr07:4219576..4219600 (25 bp)
ATAAGAGTTCATTTCACCGCGGACT
LOC_Os07g08270
OsAffx.28341.1.S1_at--920--1791Chr07:4219591..4219615 (25 bp)
ACCGCGGACTTTGGTGCTGCCATTG
LOC_Os07g08270
OsAffx.28341.1.S1_at--47--9111Chr07:4219605..4219629 (25 bp)
TGCTGCCATTGTCGTGATTCACTCA
LOC_Os07g08270
OsAffx.28341.1.S1_at--1022--971Chr07:4219637..4219661 (25 bp)
AGGAGTACCTGATGAATGCTGCTGC
LOC_Os07g08270
OsAffx.28341.1.S1_at--1059--8611Chr07:4219865..4219889 (25 bp)
TGGTGGATCCATGCGACGAAACGTT
LOC_Os07g08270
OsAffx.28341.1.S1_at--262--8531Chr07:4219901..4219925 (25 bp)
TGGACATGTGGACGAGGCTCCTCAT
LOC_Os07g08270
OsAffx.28341.1.S1_at--729--8331Chr07:4220003..4220027 (25 bp)
GGCTGCTCATGGTCAAGGCCGGCCT
LOC_Os07g08270
OsAffx.28341.1.S1_at--825--2911Chr07:4220046..4220070 (25 bp)
AAGGATCCTCATTGCAAATTCTGCT
LOC_Os07g08270
OsAffx.28341.1.S1_at--907--51Chr07:4220056..4220080 (25 bp)
ATTGCAAATTCTGCTTGCGCCGACA
LOC_Os07g08270
Target Sequence 
GGGCATGGCCAAAGCTTGGCCCATTCCTCGAAACCATAAGAGTTCATTTCACCGCGGACTTTGGTGCTGCCATTGTCGTG
ATTCACTCATTCACAGAGGAGTACCTGATGAATGCTGCTGCTGCAGCAGAAGAAGAAGAAGAAGAAGCAGGTCAGGGAGG
AGAAGCAAATGATATGATGGAGGTGTGCCGGAAGCTGTCCAACTACATGATGTACCTCTTGGTGAACCACCCTTCCATGC
TGCCGCTCAACGTCAGCTCCGAGGCTACGCTGGCTGAGGCTGCGCAGCTGATGAAGGTGGTGAGAGGGCGAGCACTGGAG
GAGATGGTGGATCCATGCGACGAAACGTTGAGGGAGATGGTGGACATGTGGACGAGGCTCCTCATCTACACCGCCGGCAA
GTCCCGGGGGCCGATGCACGCGGCGGAGCTGGCCTGTGGAGGGGAGCTCATCACCTTCGTCTGGCTGCTCATGGTCAAGG
CCGGCCTCGGGGATTCCGAGGCGAAAAGGATCCTCATTGCAAATTCTGCTTGCGCCGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28341.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis