Browse Element(s) Details


Os.14272.1.A1_at

Description gb:AK059946.1
DB_XREF= gi:32969964
TID=Os.14272.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.14272 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-210-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-210-G10, full insert sequence.
FL= gb:AK059946.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0819011/11peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08170Os.11839.1.S1_s_at11/117+4148987..4154350RuvB-like 1, putative, expressed
LOC_Os07g08170Os.38033.3.S1_x_at2/117+4148987..4154350RuvB-like 1, putative, expressed
LOC_Os07g08170Os.38033.3.S1_at1/117+4148987..4154350RuvB-like 1, putative, expressed
LOC_Os07g08180Os.33587.1.S2_at11/117+4154503..4158091pentatricopeptide, putative, expressed
LOC_Os07g08180Os.33587.1.S1_x_at11/117+4154503..4158091pentatricopeptide, putative, expressed
LOC_Os07g08190Os.14272.1.A1_at11/117+4173780..4179946peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g08200OsAffx.16151.1.S1_at11/117+4180344..418234837 kDa inner envelope membrane protein, chloroplast precursor, putative, expressed
LOC_Os07g08210Os.19026.1.S1_at11/117+4183505..4186325Cytidylyltransferase family protein, expressed
LOC_Os07g08220OsAffx.16152.1.S1_at11/117+4189376..4193389expressed protein
LOC_Os07g08230OsAffx.5252.1.S1_at11/117+4194715..4195365hypothetical protein
LOC_Os07g08240Os.18977.1.S1_at11/117+4197562..4199468ZmEBE-1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0003755molecular_functionpeptidyl-prolyl cis-trans isomerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14272.1.A1_at--151--7811Chr07:4179358..4179382 (25 bp)
GGTCGAAGAGCCGTGATCCCTCGAA
LOC_Os07g08190
Os.14272.1.A1_at--338--9311Chr07:4179374..4179398 (25 bp)
TCCCTCGAAGTCCAGATCACCAGAT
LOC_Os07g08190
Os.14272.1.A1_at--1002--1211Chr07:4179447..4179471 (25 bp)
AGTTCAAGATCCAGTAGCCCTGCTG
LOC_Os07g08190
Os.14272.1.A1_at--23--9851Chr07:4179476..4179500 (25 bp)
TAAAGGCTTGGTTTCATACTGAGAT
LOC_Os07g08190
Os.14272.1.A1_at--1024--2411Chr07:4179535..4179559 (25 bp)
AAAACCCTATGTTCCATGGTAGCTT
LOC_Os07g08190
Os.14272.1.A1_at--1145--2951Chr07:4179598..4179622 (25 bp)
AATGGCTTAATGTACTCTTCTTTTG
LOC_Os07g08190
Os.14272.1.A1_at--204--3671Chr07:4179617..4179641 (25 bp)
CTTTTGTAACGTTTCTCATTCAGAG
LOC_Os07g08190
Os.14272.1.A1_at--395--4191Chr07:4179743..4179767 (25 bp)
CCCTTTGTCGTCTTTTTATGATTGG
LOC_Os07g08190
Os.14272.1.A1_at--1060--8171Chr07:4179766..4179790 (25 bp)
GGAAGTTTGTAGTCTCTTGTCCTAT
LOC_Os07g08190
Os.14272.1.A1_at--853--6491Chr07:4179816..4179840 (25 bp)
GATAGTCTCTTGTCCTATTAAAGTC
LOC_Os07g08190
Os.14272.1.A1_at--505--6871Chr07:4179866..4179890 (25 bp)
GTATTGGCACGTTTCTTGTTTTCAA
LOC_Os07g08190
Target Sequence 
GGTCGAAGAGCCGTGATCCCTCGAAGTCCAGATCACCAGATGCTCCTGCCAAAAAGGGGAGCTCAAAATATAACCGCAGG
CGCAGCAGCAGTTCAAGATCCAGTAGCCCTGCTGGAAGTAAAGGCTTGGTTTCATACTGAGATGTGATATCAGAAGTTGA
GGTGATATCAGGAGTTGAAAACCCTATGTTCCATGGTAGCTTNGTATTGAGTACTACCCTTTAAGAATGATGATGTAGTT
AATGGCTTAATGTACTCTTCTTTTGTAACGTTTCTCATTCAGAGATTGTTGTTTTTATGCATCTTCTATTTGGATATGAT
ATTTAGACTTNTAAGTTNTAAAATGCTTCGCATCATANCCTAAGNATAATTTATAGGTAAATCTNCCCTTTGTCGTCTTT
TTATGATTGGAAGTTTGTAGTCTCTTGTCCTATTAAAGCCTGTTGGTAACTTTGTTTAGATAGTCTCTTGTCCTATTAAA
GTCTGTTGGTAACTTTGTTTAGATATTTGTATTGGCACGTTTCTTGTTTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14272.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis