Browse Element(s) Details


Os.11839.1.S1_s_at

Description gb:BQ908269
DB_XREF= gi:22307047
DB_XREF=T005D07
CLONE=T005D07
TID=Os.11839.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.11839 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_197625.1 (A.thaliana) Ruv DNA-helicase-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0817011/11RuvB-like 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08140Os.18587.1.S1_at11/117+4137460..4140736Heat shock factor protein HSF30, putative, expressed
LOC_Os07g08150OsAffx.24280.2.S1_at11/117+4141640..4142873early light-inducible protein ELIP, putative, expressed
LOC_Os07g08150Os.57519.1.S1_x_at3/117+4141640..4142873early light-inducible protein ELIP, putative, expressed
LOC_Os07g08160Os.57519.1.S1_x_at1/117+4144214..4145153Early light-induced protein, chloroplast precursor, putative, expressed
LOC_Os07g08170Os.11839.1.S1_s_at11/117+4148987..4154350RuvB-like 1, putative, expressed
LOC_Os07g08170Os.38033.3.S1_x_at2/117+4148987..4154350RuvB-like 1, putative, expressed
LOC_Os07g08170Os.38033.3.S1_at1/117+4148987..4154350RuvB-like 1, putative, expressed
LOC_Os07g08180Os.33587.1.S2_at11/117+4154503..4158091pentatricopeptide, putative, expressed
LOC_Os07g08180Os.33587.1.S1_x_at11/117+4154503..4158091pentatricopeptide, putative, expressed
LOC_Os07g08190Os.14272.1.A1_at11/117+4173780..4179946peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003678molecular_functionDNA helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11839.1.S1_s_at--1135--10191Chr07:4149870..4149894 (25 bp)
TATTCAGTTGCTATCACCCGCCAGT
LOC_Os07g08170
Os.11839.1.S1_s_at--170--9651Chr07:4149638..4149662 (25 bp)
TCAGTGCTCTGTATTTGGACGCTAA
LOC_Os07g08170
Os.11839.1.S1_s_at--1024--10231Chr07:4149625..4149649 (25 bp)
TTTGGACGCTAAATCATCGGCTCGT
LOC_Os07g08170
Os.11839.1.S1_s_at--841--3651Chr07:4149569..4149593 (25 bp)
CTTAAATTTCTCTTGCAGTATGACG
LOC_Os07g08170
Os.11839.1.S1_s_at--272--6471Chr07:4149545..4149569 (25 bp)
GATAAACTCGAGAATTTGTCCCTAT
LOC_Os07g08170
Os.11839.1.S1_s_at--140--10831Chr07:4149530..4149554 (25 bp)
TTGTCCCTATTCATGCTGTACACAG
LOC_Os07g08170
Os.11839.1.S1_s_at--934--7031Chr07:4149513..4149537 (25 bp)
GTACACAGGTGCGAAGACTCTTTCA
LOC_Os07g08170
Os.11839.1.S1_s_at--713--5711Chr07:4149498..4149522 (25 bp)
GACTCTTTCAGGAGCACACTTGATT
LOC_Os07g08170
Os.11839.1.S1_s_at--604--731Chr07:4149444..4149468 (25 bp)
ATGTACCCCTGCACTGTAGGCAGCC
LOC_Os07g08170
Os.11839.1.S1_s_at--890--5071Chr07:4149425..4149449 (25 bp)
GCAGCCTCTAGAGAATAGCAGCATT
LOC_Os07g08170
Os.11839.1.S1_s_at--980--9911Chr07:4149377..4149401 (25 bp)
TACTGTTTGCTGAGTAGATCTCCTA
LOC_Os07g08170
Target Sequence 
TATTCAGTTGCTATCACCCGCCAGTGTAGTTGCAAAGGCTAATGGGAGAGAGAAGATCAGCAAGGCCGATCTTGAGGAAG
TCAGTGCTCTGTATTTGGACGCTAAATCATCGGCTCGTCTCCTTCAGGAGCAGCAAGNAAGATACNTTACTTAAATTTCT
CTTGCAGTATGACGATAAACTCGAGAATTTGTCCCTATTCATGCTGTACACAGGTGCGAAGACTCTTTCAGGAGCACACT
TGATTGATTTTTGCAGAAATGTAGAAACTGAACNATGTACCCCTGCACTGTAGGCAGCCTCTAGAGAATAGCAGCATTTT
CGAAGTATTGCTTGTTCAAACTACTGTTTGCTGAGTAGATCTCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11839.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis