Browse Element(s) Details


OsAffx.24280.2.S1_at

Description tigr:9635.m00764
TID=OsAffx.24280.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Chlorophyll A-B binding protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0815011/11early light-inducible protein ELIP, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08120Os.15264.1.S1_at11/117+4116736..4121887ETO1-like protein 1, putative, expressed
LOC_Os07g08129NANA7+4123125..4123649NA
LOC_Os07g08140Os.18587.1.S1_at11/117+4137460..4140736Heat shock factor protein HSF30, putative, expressed
LOC_Os07g08150OsAffx.24280.2.S1_at11/117+4141640..4142873early light-inducible protein ELIP, putative, expressed
LOC_Os07g08150Os.57519.1.S1_x_at3/117+4141640..4142873early light-inducible protein ELIP, putative, expressed
LOC_Os07g08160Os.57519.1.S1_x_at1/117+4144214..4145153Early light-induced protein, chloroplast precursor, putative, expressed
LOC_Os07g08170Os.11839.1.S1_s_at11/117+4148987..4154350RuvB-like 1, putative, expressed
LOC_Os07g08170Os.38033.3.S1_x_at2/117+4148987..4154350RuvB-like 1, putative, expressed
LOC_Os07g08170Os.38033.3.S1_at1/117+4148987..4154350RuvB-like 1, putative, expressed
LOC_Os07g08180Os.33587.1.S2_at11/117+4154503..4158091pentatricopeptide, putative, expressed
LOC_Os07g08180Os.33587.1.S1_x_at11/117+4154503..4158091pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016168molecular_functionchlorophyll binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24280.2.S1_at--202--9751Chr07:4142566..4142590 (25 bp)
TAATTAAGCTGCACTGTACACGTGT
LOC_Os07g08150
OsAffx.24280.2.S1_at--1030--10491Chr07:4142569..4142593 (25 bp)
TTAAGCTGCACTGTACACGTGTACG
LOC_Os07g08150
OsAffx.24280.2.S1_at--126--2691Chr07:4142571..4142595 (25 bp)
AAGCTGCACTGTACACGTGTACGTA
LOC_Os07g08150
OsAffx.24280.2.S1_at--845--2151Chr07:4142583..4142607 (25 bp)
ACACGTGTACGTACAATACATTCAT
LOC_Os07g08150
OsAffx.24280.2.S1_at--493--3991Chr07:4142586..4142610 (25 bp)
CGTGTACGTACAATACATTCATGTA
LOC_Os07g08150
OsAffx.24280.2.S1_at--346--3091Chr07:4142597..4142621 (25 bp)
AATACATTCATGTACTTGCGTATGT
LOC_Os07g08150
OsAffx.24280.2.S1_at--446--111Chr07:4142602..4142626 (25 bp)
ATTCATGTACTTGCGTATGTACTGG
LOC_Os07g08150
OsAffx.24280.2.S1_at--438--3511Chr07:4142605..4142629 (25 bp)
CATGTACTTGCGTATGTACTGGGTA
LOC_Os07g08150
OsAffx.24280.2.S1_at--547--9891Chr07:4142609..4142633 (25 bp)
TACTTGCGTATGTACTGGGTAGCTA
LOC_Os07g08150
OsAffx.24280.2.S1_at--580--3631Chr07:4142611..4142635 (25 bp)
CTTGCGTATGTACTGGGTAGCTAGC
LOC_Os07g08150
OsAffx.24280.2.S1_at--346--10011Chr07:4142632..4142656 (25 bp)
TAGCTAGGCCGGGTTGTGTGTGTGT
LOC_Os07g08150
Target Sequence 
TAATTAAGCTGCACTGTACACGTGTACGTACAATACATTCATGTACTTGCGTATGTACTGGGTAGCTAGCTAGGCCGGGT
TGTGTGTGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24280.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis