Browse Element(s) Details


Os.18587.1.S1_at

Description gb:AY323488.1
DB_XREF= gi:33087080
GEN=HS1
TID=Os.18587.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18587 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) heat stress protein (HS1) mRNA, complete cds.
PROD=heat stress protein
FL= gb:AY344487.1 gb:AY323488.1 gb:AK101824.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0814011/11Heat shock factor protein HSF30, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08120Os.15264.1.S1_at11/117+4116736..4121887ETO1-like protein 1, putative, expressed
LOC_Os07g08129NANA7+4123125..4123649NA
LOC_Os07g08140Os.18587.1.S1_at11/117+4137460..4140736Heat shock factor protein HSF30, putative, expressed
LOC_Os07g08150OsAffx.24280.2.S1_at11/117+4141640..4142873early light-inducible protein ELIP, putative, expressed
LOC_Os07g08150Os.57519.1.S1_x_at3/117+4141640..4142873early light-inducible protein ELIP, putative, expressed
LOC_Os07g08160Os.57519.1.S1_x_at1/117+4144214..4145153Early light-induced protein, chloroplast precursor, putative, expressed
LOC_Os07g08170Os.11839.1.S1_s_at11/117+4148987..4154350RuvB-like 1, putative, expressed
LOC_Os07g08170Os.38033.3.S1_x_at2/117+4148987..4154350RuvB-like 1, putative, expressed
LOC_Os07g08170Os.38033.3.S1_at1/117+4148987..4154350RuvB-like 1, putative, expressed
LOC_Os07g08180Os.33587.1.S2_at11/117+4154503..4158091pentatricopeptide, putative, expressed
LOC_Os07g08180Os.33587.1.S1_x_at11/117+4154503..4158091pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009408biological_processresponse to heat
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18587.1.S1_at--725--3591Chr07:4139932..4139956 (25 bp)
CATTCTTGGCGCGTGTCATGAAAAA
LOC_Os07g08140
Os.18587.1.S1_at--1005--5971Chr07:4139996..4140020 (25 bp)
GAGAAAGGAGCTCCAAGATGCCATT
LOC_Os07g08140
Os.18587.1.S1_at--168--2951Chr07:4140032..4140056 (25 bp)
AAGGCGTCGCATAGATCAGGGACCT
LOC_Os07g08140
Os.18587.1.S1_at--991--1231Chr07:4140059..4140083 (25 bp)
AGTTGACGACGTCGGCACTAGCAGT
LOC_Os07g08140
Os.18587.1.S1_at--1132--4951Chr07:4140085..4140109 (25 bp)
GCATAGAGCAAGAGTCACCGGCCTT
LOC_Os07g08140
Os.18587.1.S1_at--121--6851Chr07:4140110..4140134 (25 bp)
GTTTGATCCCCAGGAGTCGGTGGAA
LOC_Os07g08140
Os.18587.1.S1_at--78--6111Chr07:4140123..4140147 (25 bp)
GAGTCGGTGGAATTCCTCATCGATG
LOC_Os07g08140
Os.18587.1.S1_at--384--91Chr07:4140150..4140174 (25 bp)
ATTCCCTCCGATCTTGAAAACTCAG
LOC_Os07g08140
Os.18587.1.S1_at--1127--1831Chr07:4140262..4140286 (25 bp)
ACGACAATTTCTGGGAGGAGCTGCT
LOC_Os07g08140
Os.18587.1.S1_at--1049--151Chr07:4140416..4140440 (25 bp)
ATTATACCACATTGCTGTCAGCTTT
LOC_Os07g08140
Os.18587.1.S1_at--1127--7091Chr07:4140432..4140456 (25 bp)
GTCAGCTTTCGCCATGTGAATTTAA
LOC_Os07g08140
Target Sequence 
CATTCTTGGCGCGTGTCATGAAAAATCCTGAGTTCTTAAAACAACTTATGTCCCAGAATGAGATGAGAAAGGAGCTCCAA
GATGCCATTTCAAAGAAAAGAAGGCGTCGCATAGATCAGGGACCTGAAGTTGACGACGTCGGCACTAGCAGTAGCATAGA
GCAAGAGTCACCGGCCTTGTTTGATCCCCAGGAGTCGGTGGAATTCCTCATCGATGGGNATTCCCTCCGATCTTGAAAAC
TCAGCTATGGATGCTGGAGGTCTGGTGGAGCCACAGGATTTCNGATGTCGGCGCCTCCGAACAGCAGCAGATCGGNCCCC
AGGGGGAGTTGAACGACAATTTCTGGGAGGAGCTGCTGAACGAAGGGCTTGTTGGTGAGGAGAACGACAACCCGGTCGTC
GAGGACGACATGAATGTGTTGTCGGAGAAGATGGGTTACCTCAACTCAAATGGCCCAACGGCTGGGGAATAGGGGAATAG
CTAATTTCATTCAAATTATACCACATTGCTGTCAGCTTTCGCCATGTGAATTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18587.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis