Browse Element(s) Details


Os.33587.1.S1_x_at

Description gb:AK119505.1
DB_XREF= gi:37989128
TID=Os.33587.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33587 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013136M08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-134-F04, full insert sequence.
FL= gb:AK119505.1 gb:AK100008.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0818011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g08140Os.18587.1.S1_at11/117+4137460..4140736Heat shock factor protein HSF30, putative, expressed
LOC_Os07g08150OsAffx.24280.2.S1_at11/117+4141640..4142873early light-inducible protein ELIP, putative, expressed
LOC_Os07g08150Os.57519.1.S1_x_at3/117+4141640..4142873early light-inducible protein ELIP, putative, expressed
LOC_Os07g08160Os.57519.1.S1_x_at1/117+4144214..4145153Early light-induced protein, chloroplast precursor, putative, expressed
LOC_Os07g08170Os.11839.1.S1_s_at11/117+4148987..4154350RuvB-like 1, putative, expressed
LOC_Os07g08170Os.38033.3.S1_x_at2/117+4148987..4154350RuvB-like 1, putative, expressed
LOC_Os07g08170Os.38033.3.S1_at1/117+4148987..4154350RuvB-like 1, putative, expressed
LOC_Os07g08180Os.33587.1.S2_at11/117+4154503..4158091pentatricopeptide, putative, expressed
LOC_Os07g08180Os.33587.1.S1_x_at11/117+4154503..4158091pentatricopeptide, putative, expressed
LOC_Os07g08190Os.14272.1.A1_at11/117+4173780..4179946peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os07g08200OsAffx.16151.1.S1_at11/117+4180344..418234837 kDa inner envelope membrane protein, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33587.1.S1_x_at--448--9991Chr07:4156178..4156202 (25 bp)
TAGCCATATGATCCCATGTTTTGTG
LOC_Os07g08180
Os.33587.1.S1_x_at--1162--51Chr07:4156215..4156239 (25 bp)
ATTGAAGAGGCTTGCTCGTGCTACA
LOC_Os07g08180
Os.33587.1.S1_x_at--4--4931Chr07:4156224..4156248 (25 bp)
GCTTGCTCGTGCTACAACTTGATGA
LOC_Os07g08180
Os.33587.1.S1_x_at--197--6871Chr07:4156257..4156281 (25 bp)
GTTTGGATACCAAGCATTTCAGCCT
LOC_Os07g08180
Os.33587.1.S1_x_at--722--2711Chr07:4156268..4156292 (25 bp)
AAGCATTTCAGCCTATTGTGCTCTT
LOC_Os07g08180
Os.33587.1.S1_x_at--532--3011Chr07:4156323..4156347 (25 bp)
AATGCAGCTATTTCACTTGTTAAGG
LOC_Os07g08180
Os.33587.1.S1_x_at--98--8451Chr07:4156372..4156396 (25 bp)
GGCCAATGGAATTCAAGTACACCTT
LOC_Os07g08180
Os.33587.1.S1_x_at--600--1171Chr07:4156387..4156411 (25 bp)
AGTACACCTTGACTATTCTTGAAGC
LOC_Os07g08180
Os.33587.1.S1_x_at--9--5711Chr07:4156397..4156421 (25 bp)
GACTATTCTTGAAGCTTGCCAATCA
LOC_Os07g08180
Os.33587.1.S1_x_at--921--7011Chr07:4156551..4156575 (25 bp)
GTACTATCTACCATGAGAGATCGCA
LOC_Os07g08180
Os.33587.1.S1_x_at--653--8991Chr07:4156630..4156654 (25 bp)
TGAAGAATGTCACTGCAGATTTGGT
LOC_Os07g08180
Target Sequence 
TAGCCATATGATCCCATGTTTTGTGGACGAAGGAAATATTGAAGAGGCTTGCTCGTGCTACAACTTGATGATGAAGGCAG
TTTGGATACCAAGCATTTCAGCCTATTGTGCTCTTGTGAAAGGGTTGTGCAAAAAAGGAGAGATAAATGCAGCTATTTCA
CTTGTTAAGGATTGTCTTGGGAATGTGGAAAATGGGCCAATGGAATTCAAGTACACCTTGACTATTCTTGAAGCTTGCCA
ATCAAAAAGCCCAGAGAAGGTCATCAAAGTGGTGGACGAAATGATTGAGTTAGGTTATTCCATAGAAGAAATTATATATT
CTGCTATTATTTATGGTTTCTGCAAGTATGCAAGTTCAACTGAGGCAAGAAAAGTACTATCTACCATGAGAGATCGCAAT
ATTATTTCAGAAGCCAATTATATTGTTTATGAGGATATGTTGAATGAGCATTTGAAGAATGTCACTGCAGATTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33587.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis