Browse Element(s) Details


Os.38033.3.S1_at

Description gb:NM_190501.1
DB_XREF= gi:34908085
GEN=P0506B12.32
TID=Os.38033.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38033 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0506B12.33 (P0506B12.33), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0506B12.32 (P0506B12.32), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6204011/11RuvB-like 1, putative, expressed
LOC_Os07g081701/11RuvB-like 1, putative, expressed
LOC_Os12g311301/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61980Os.6795.1.S1_at11/111+36207873..36209261expressed protein
LOC_Os01g61990Os.16933.1.S1_at10/111+36211621..36215258ankyrin repeat family protein, putative, expressed
LOC_Os01g62000OsAffx.11689.1.S1_s_at11/111+36216652..36218214Pectate lyase family protein
LOC_Os01g62010Os.36919.2.S1_s_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62010Os.36919.1.S1_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62010Os.36919.1.S1_x_at11/111+36220130..36222021Monoglyceride lipase, putative, expressed
LOC_Os01g62020Os.9835.2.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020Os.9835.1.S1_a_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020OsAffx.11691.1.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62030OsAffx.9560.1.S1_at11/111+36227584..36228075disease resistance-responsive family protein, putative
LOC_Os01g62040Os.38033.3.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.3.S1_x_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.1.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.2.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62050OsAffx.21763.2.S1_s_at11/111+36235334..36235956hypothetical protein
LOC_Os01g62050OsAffx.21763.2.S1_at10/111+36235334..36235956hypothetical protein
LOC_Os01g62050OsAffx.21763.1.S1_at2/111+36235334..36235956hypothetical protein
LOC_Os01g62060Os.30998.1.S1_at11/111+36238933..36240170uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os01g62070Os.10121.1.S1_at11/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62070Os.42490.1.S1_x_at10/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62070Os.42490.1.S1_at10/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62080Os.54716.1.S1_x_at11/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62080OsAffx.2386.1.S1_at11/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62080Os.20399.1.S1_s_at10/111+36250715..36256828Protein kinase AFC1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003678molecular_functionDNA helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38033.3.S1_at--617--8172Chr01:36233696..36233822 (25 bp)
GGAATATGTAATTTAACAAGTCTTT
LOC_Os01g62040
Os.38033.3.S1_at--867--10191Chr01:36233823..36233847 (25 bp)
TATATACTTGTGTGAATGTGTCCAG
LOC_Os01g62040
Os.38033.3.S1_at--86--251Chr01:36233824..36233848 (25 bp)
ATATACTTGTGTGAATGTGTCCAGA
LOC_Os01g62040
Os.38033.3.S1_at--791--10171Chr01:36233825..36233849 (25 bp)
TATACTTGTGTGAATGTGTCCAGAG
LOC_Os01g62040
Os.38033.3.S1_at--407--331Chr01:36233826..36233850 (25 bp)
ATACTTGTGTGAATGTGTCCAGAGG
LOC_Os01g62040
Os.38033.3.S1_at--1088--9871Chr01:36233827..36233851 (25 bp)
TACTTGTGTGAATGTGTCCAGAGGA
LOC_Os01g62040
Os.38033.3.S1_at--445--2071Chr01:36233828..36233852 (25 bp)
ACTTGTGTGAATGTGTCCAGAGGAA
LOC_Os01g62040
Os.38033.3.S1_at--798--3611Chr01:36233829..36233853 (25 bp)
CTTGTGTGAATGTGTCCAGAGGAAC
LOC_Os01g62040
Os.38033.3.S1_at--437--10831Chr01:36233830..36233854 (25 bp)
TTGTGTGAATGTGTCCAGAGGAACT
LOC_Os01g62040
Os.38033.3.S1_at--201--8671Chr01:36233833..36233857 (25 bp)
TGTGAATGTGTCCAGAGGAACTGAT
LOC_Os01g62040
Os.38033.3.S1_at--609--5272Chr01:36233836..36233860 (25 bp)
GAATGTGTCCAGAGGAACTGATATG
LOC_Os01g62040
Target Sequence 
GGAATATGTAATTTAACAAGTCTTTTATATACTTGTGTGAATGTGTCCAGAGGAACTGATATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38033.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis