Browse Element(s) Details


OsAffx.2386.1.S1_at

Description tigr:9629.m06124
TID=OsAffx.2386.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6208011/11Protein kinase AFC1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62020Os.9835.2.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020Os.9835.1.S1_a_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62020OsAffx.11691.1.S1_at11/111+36223875..36227429UDP-D-glucuronate decarboxylase, putative, expressed
LOC_Os01g62030OsAffx.9560.1.S1_at11/111+36227584..36228075disease resistance-responsive family protein, putative
LOC_Os01g62040Os.38033.3.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.3.S1_x_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.1.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62040Os.38033.2.S1_at11/111+36229821..36235174RuvB-like 1, putative, expressed
LOC_Os01g62050OsAffx.21763.2.S1_s_at11/111+36235334..36235956hypothetical protein
LOC_Os01g62050OsAffx.21763.2.S1_at10/111+36235334..36235956hypothetical protein
LOC_Os01g62050OsAffx.21763.1.S1_at2/111+36235334..36235956hypothetical protein
LOC_Os01g62060Os.30998.1.S1_at11/111+36238933..36240170uncharacterized plant-specific domain TIGR01589 family protein, expressed
LOC_Os01g62070Os.10121.1.S1_at11/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62070Os.42490.1.S1_x_at10/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62070Os.42490.1.S1_at10/111+36243599..36248818cation efflux family protein, expressed
LOC_Os01g62080Os.54716.1.S1_x_at11/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62080OsAffx.2386.1.S1_at11/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62080Os.20399.1.S1_s_at10/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62090OsAffx.11692.1.S1_at8/111+36262295..36265380hypothetical protein
LOC_Os01g62090OsAffx.30618.1.S1_at1/111+36262295..36265380hypothetical protein
LOC_Os01g62100OsAffx.13663.1.S1_x_at11/111+36267089..36276320hypothetical protein
LOC_Os01g62110Os.10760.1.S1_at11/111+36279778..36280345expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006397biological_processmRNA processing
GO:0045449biological_processregulation of transcription
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2386.1.S1_at--776--9591Chr01:36250799..36250823 (25 bp)
TCATATGTTACAGAGATCGCGTTTG
LOC_Os01g62080
OsAffx.2386.1.S1_at--844--3571Chr01:36250798..36250822 (25 bp)
CATATGTTACAGAGATCGCGTTTGT
LOC_Os01g62080
OsAffx.2386.1.S1_at--132--271Chr01:36250797..36250821 (25 bp)
ATATGTTACAGAGATCGCGTTTGTT
LOC_Os01g62080
OsAffx.2386.1.S1_at--172--10111Chr01:36250796..36250820 (25 bp)
TATGTTACAGAGATCGCGTTTGTTT
LOC_Os01g62080
OsAffx.2386.1.S1_at--23--731Chr01:36250795..36250819 (25 bp)
ATGTTACAGAGATCGCGTTTGTTTG
LOC_Os01g62080
OsAffx.2386.1.S1_at--407--8791Chr01:36250794..36250818 (25 bp)
TGTTACAGAGATCGCGTTTGTTTGA
LOC_Os01g62080
OsAffx.2386.1.S1_at--654--6771Chr01:36250793..36250817 (25 bp)
GTTACAGAGATCGCGTTTGTTTGAA
LOC_Os01g62080
OsAffx.2386.1.S1_at--1128--10471Chr01:36250792..36250816 (25 bp)
TTACAGAGATCGCGTTTGTTTGAAG
LOC_Os01g62080
OsAffx.2386.1.S1_at--433--3431Chr01:36250789..36250813 (25 bp)
CAGAGATCGCGTTTGTTTGAAGACG
LOC_Os01g62080
OsAffx.2386.1.S1_at--276--1331Chr01:36250788..36250812 (25 bp)
AGAGATCGCGTTTGTTTGAAGACGG
LOC_Os01g62080
OsAffx.2386.1.S1_at--657--6371Chr01:36250785..36250809 (25 bp)
GATCGCGTTTGTTTGAAGACGGCGA
LOC_Os01g62080
Target Sequence 
TCATATGTTACAGAGATCGCGTTTGTTTGAAGACGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2386.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis