Browse Element(s) Details


Os.10760.1.S1_at

Description gb:AU075817
DB_XREF= gi:5455569
DB_XREF=AU075817
CLONE=R0001_22Z
TID=Os.10760.1
CNT=4
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.10760 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0031D11.8 (P0031D11.8), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6211011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g62080Os.54716.1.S1_x_at11/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62080OsAffx.2386.1.S1_at11/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62080Os.20399.1.S1_s_at10/111+36250715..36256828Protein kinase AFC1, putative, expressed
LOC_Os01g62090OsAffx.11692.1.S1_at8/111+36262295..36265380hypothetical protein
LOC_Os01g62090OsAffx.30618.1.S1_at1/111+36262295..36265380hypothetical protein
LOC_Os01g62100OsAffx.13663.1.S1_x_at11/111+36267089..36276320hypothetical protein
LOC_Os01g62110Os.10760.1.S1_at11/111+36279778..36280345expressed protein
LOC_Os01g62120NANA1+36291156..36291593hypothetical protein
LOC_Os01g62130Os.28023.1.S1_at11/111+36293007..36293783Zinc finger, C2H2 type family protein, expressed
LOC_Os01g62140Os.24942.4.A1_x_at5/111+36299711..36300508hypothetical protein
LOC_Os01g62140Os.24942.4.A1_at3/111+36299711..36300508hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10760.1.S1_at--74--9111Chr01:36280280..36280304 (25 bp)
TGCTGCCGTGTGTTGCTAAGCTTCA
LOC_Os01g62110
Os.10760.1.S1_at--452--6271Chr01:36280254..36280278 (25 bp)
GATGTCGCAGAGAGCCGGGAGGCAC
LOC_Os01g62110
Os.10760.1.S1_at--144--3911Chr01:36280036..36280060 (25 bp)
CGGCCAGGGACCTGGAGATGATCAC
LOC_Os01g62110
Os.10760.1.S1_at--53--551Chr01:36280004..36280028 (25 bp)
ATCGCCAGCTACAAGTACGGTGCTT
LOC_Os01g62110
Os.10760.1.S1_at--545--6991Chr01:36279990..36280014 (25 bp)
GTACGGTGCTTAGGCTACGACCTCA
LOC_Os01g62110
Os.10760.1.S1_at--430--1871Chr01:36279974..36279998 (25 bp)
ACGACCTCACGGCTCACGCATGTGT
LOC_Os01g62110
Os.10760.1.S1_at--690--7891Chr01:36279882..36279906 (25 bp)
GGTTCTTCGATCGAGACTGATCTCG
LOC_Os01g62110
Os.10760.1.S1_at--148--1971Chr01:36279867..36279891 (25 bp)
ACTGATCTCGTGTCCTGTTTAGCAT
LOC_Os01g62110
Os.10760.1.S1_at--331--8711Chr01:36279857..36279881 (25 bp)
TGTCCTGTTTAGCATGCCGTTTGAT
LOC_Os01g62110
Os.10760.1.S1_at--785--10011Chr01:36279848..36279872 (25 bp)
TAGCATGCCGTTTGATTGTTTTTCT
LOC_Os01g62110
Os.10760.1.S1_at--143--10791Chr01:36279833..36279857 (25 bp)
TTGTTTTTCTCGTGATGTATTTCCT
LOC_Os01g62110
Target Sequence 
TGCTGCCGTGTGTTGCTAAGCTTCAAGATGTCGCAGAGAGCCGGGAGGCACCAGAGGAGGGCGTCGCAGAGCGTGTTCGT
GCTGCCGGAGAACTTCGCCAGCCTCGAGGACGTGGCGGCGGACGTCATCGGCGGCGGCGGCGCCGAGCAGCGGAAGCCCG
CGGCGGCGGCGGACGCGTCGTCGGAGCAGCAGCCGGCGAGGATGCAGGCGGGGCGGCACCGGCGGGCAATGTCGATGGCC
GTGGCGGCCAGGGACCTGGAGATGATCACGGAGGACATCGCCAGCTACAAGTACGGTGCTTAGGCTACGACCTCACGGCT
CACGCATGTGTNGGTACNGTGTTCCAACAGCNGGCGGCGGNTGTACNTCCNTGGGNCTAGGNTGCNAGAAAAANNGNNGG
NNNGGNGGTTCTTCGATCGAGACTGATCTCGTGTCCTGTTTAGCATGCCGTTTGATTGTTTTTCTCGTGATGTATTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis